Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi412g00008 ATGGCTGAGCCACTAAGCTCAGAAACAGAGACAAGAAGCACAAGTTGCACTTCACCTTCTTCATCTTCACCACCACCACCACAACCACCATCATCAAGTTCAAGAAAGCGTGCGAGAGATAGCAATAGCAATAGCAATAGCAATAGCAAGCACCCGGTTTACAGAGGGGTCCGAATGCGCACGTGGGGCAAATGGGTATCCGAAATTCGAGAGCCCAGAAAGAAGAACCGAATCTGGCTCGGTACATTCGCCACCGCAGAGATGGCGGCGCGTGCACACGACGTCGCCGCGCTCACCATAAAGGGCTCCTCAGCCATCCTCAACTTCCCCGAACTCGCCGGGTCACTGCCCCGACCCGCATCCAACTCGCCCCGGGACGTTCAAGCAGCCGCAGCCAAAGCCGCTTCCATGGAAGTTCATCTCACCCCTCCGTCGCCGGAGGATTCGTCTTCGTCGTCGTCGACGCCGGAGGATCTGGGTGAGATAGTGGAGCTTCCGCCGTTGGGAACCAGTTTCGAATCACCCGACCCGAGTAGAGAGTTCGTGTTTTTCGACCCGGTTGATGGGTGGCCCTATCCTCACCCGTGGTATCACGGCATTTATGATGACCAGGATAATGGTGGTTACTTTATTGGAGATATGAACAACATGATATCAATGCAAGACTCAGAGAGTATGGTTCTTTCATCGTGGCCTTAA 699 0.5408 MAEPLSSETETRSTSCTSPSSSSPPPPQPPSSSSRKRARDSNSNSNSNSKHPVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALTIKGSSAILNFPELAGSLPRPASNSPRDVQAAAAKAASMEVHLTPPSPEDSSSSSSTPEDLGEIVELPPLGTSFESPDPSREFVFFDPVDGWPYPHPWYHGIYDDQDNGGYFIGDMNNMISMQDSESMVLSSWP 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi412g00008 232 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Gabi412g00008 232 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Gabi412g00008 232 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Gabi412g00008 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 34 170 - -
Gabi412g00008 232 MobiDBLite consensus disorder prediction 33 52 - -
Gabi412g00008 232 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Gabi412g00008 232 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Gabi412g00008 232 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Gabi412g00008 232 MobiDBLite consensus disorder prediction 143 158 - -
Gabi412g00008 232 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Gabi412g00008 232 MobiDBLite consensus disorder prediction 1 19 - -
Gabi412g00008 232 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Gabi412g00008 232 MobiDBLite consensus disorder prediction 140 162 - -
Gabi412g00008 232 MobiDBLite consensus disorder prediction 1 55 - -
Gabi412g00008 232 SUPERFAMILY DNA-binding domain 53 111 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi412g00008 Gabi-Chr412 59713 60448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi412g00008 1 207 AP2-EREBP Transcription Factor Family AT5G11590 52.174 1.50e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi412g00008 AP2 7.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi412g00008 K09286 - gmx:100804801 296.975