Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi412g00002 ATGGATGTAATTAACAGTAATGAAAACGACATTGTCACATGCAATGAAGTCATGGTACAAAATGAATATCCAAGTACTGAAGATTCATCAAATGTCACGTCAAGCAACAACGACGACGATGTTACAAAACATCCAGAGCAGATTAAAACAAAGGAATGTTTGGTGCAGCGAAGATTTAGCCTTAGACTTCAAAATCGGAAGGACAATGGCAAAGATAATAAAAAGAGATCAATGAGTGATAACAATGGGAACAATTTTGATCCGAAGAGAGCAAAGATTGAAGTAGGTGAAACATGCATAAGCGATACAAGCTCTCCCTCTAGTGATTTTCTTCATGTGTTTGATGAATTGGACTTCAGGGGCGTTCTAATGATAAAAGAATCGTTGAGATCTTTCAATCTCCATAGACTTGAATCTTCTCAGGTAGAGCAGAGTAAATCCAAGAAGCTGGATAAGAGGGATGCCAAACTTTTAAGGACTAAGGATGTTGATAAAAATTGGGCTGAGAAAGGTTTTCCTACAAGCACAGGGTGTAAGTATCTTTTAAAGCAGCTTCGGAGACTGGCCAAATTGGGTAATGATAAGGTTGTACATTTGACTCGAGGGCAAGTATCCAGTGCTTCTGAATATCCATGTTTGGTTTGCAAGGACCTTAGCAATGGACAAGAAGCCATTACCATTCCAGTAACTAATGAATATGATGATCCCCCCATTGCACCTGAGGGGTTTGCATATACCACATCACTTCAATATGCAAGCAACGTTAAAGTTCCCTCTAGTGACAAAGATTGCAAGTGCAAAGGAAGTTGTAGAAATATGAGTACTTGCTCTTGTGCTCTTCGTAATGGCTCCGAGTTTCCATATGTTGTTGGTCGGAAAGGTTGCAGATTGATGCAGCCTACAGATATTTTGTATGAATGTGGTCCAAGATGTGGACCTAATTGTGACAATAAAATAACTCAAAAGGGTTTGAGTTATAAGCTTGAGGTTTATAGAACTCCCAACAAAGGGTGGGCAGTTAGAACATGGGACTTCATTCCTTGTGGTGCACCTATTTGTGAATATTTTGGTGTTGTTAGAAGAAATGAAGATTTGGAGTTGGAGAGTGCTCTAGGGAATGCTTTTATATTTGACATTGATTGCTTACATACAATTAATGAGGTAGATGGACGGGAGAGAAGGTTGCGTGATGTATCATTGCCGAGTAACACTTTTGTTGAAAAAAGAAATGAAGTGACAACAGAAAATGAGCCCGAGTTCAGCATAGATGCCAACTCTTTTGGGAATGTTGTTAGGCTCATAAATCATAGTTGTGATCCTAACCTCTTTGTTCAATGTGTTCTGAGCTCTCACCATGATATCAGACTAGCTAGGATAGTGTTATTTGCGGCACAAGACATACCTCCTTACCAAGAGCTCACATATGATTATGGTTATATACTTGATAGTGTTGTTGGTCCTGATGGAATACCTAAGCAGTTACCTTGTTACTGTGGTGCAGCTGATTGTCGCAAGCGCTTATACTAG 1527 0.3942 MDVINSNENDIVTCNEVMVQNEYPSTEDSSNVTSSNNDDDVTKHPEQIKTKECLVQRRFSLRLQNRKDNGKDNKKRSMSDNNGNNFDPKRAKIEVGETCISDTSSPSSDFLHVFDELDFRGVLMIKESLRSFNLHRLESSQVEQSKSKKLDKRDAKLLRTKDVDKNWAEKGFPTSTGCKYLLKQLRRLAKLGNDKVVHLTRGQVSSASEYPCLVCKDLSNGQEAITIPVTNEYDDPPIAPEGFAYTTSLQYASNVKVPSSDKDCKCKGSCRNMSTCSCALRNGSEFPYVVGRKGCRLMQPTDILYECGPRCGPNCDNKITQKGLSYKLEVYRTPNKGWAVRTWDFIPCGAPICEYFGVVRRNEDLELESALGNAFIFDIDCLHTINEVDGRERRLRDVSLPSNTFVEKRNEVTTENEPEFSIDANSFGNVVRLINHSCDPNLFVQCVLSSHHDIRLARIVLFAAQDIPPYQELTYDYGYILDSVVGPDGIPKQLPCYCGAADCRKRLY 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi412g00002 508 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 162 501 - -
Gabi412g00002 508 SMART set_7 326 484 IPR001214 GO:0005515
Gabi412g00002 508 SMART PostSET_3 492 508 IPR003616 -
Gabi412g00002 508 ProSiteProfiles SET domain profile. 326 478 IPR001214 GO:0005515
Gabi412g00002 508 Gene3D SET domain 208 508 IPR046341 -
Gabi412g00002 508 SMART preset_2 215 312 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi412g00002 508 MobiDBLite consensus disorder prediction 24 49 - -
Gabi412g00002 508 MobiDBLite consensus disorder prediction 64 90 - -
Gabi412g00002 508 Pfam Pre-SET motif 219 318 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi412g00002 508 ProSiteProfiles Pre-SET domain profile. 262 323 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi412g00002 508 ProSiteProfiles Post-SET domain profile. 492 508 IPR003616 -
Gabi412g00002 508 Pfam SET domain 337 478 IPR001214 GO:0005515
Gabi412g00002 508 MobiDBLite consensus disorder prediction 64 78 - -
Gabi412g00002 508 MobiDBLite consensus disorder prediction 24 38 - -
Gabi412g00002 508 SUPERFAMILY SET domain 212 484 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi412g00002 Gabi-Chr412 19481 27084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi412g00002 163 508 EF-hand Containing Proteins AT5G13960 54.155 8.27e-125 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi412g00002 SET 9.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi412g00002 K11420 - aprc:113866803 471.085