Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4129g00003 ATGCAGCCCCGTAGCAGAGAAATGCAAGGAATCAACTCCCTCTTGAACTCTTCTCAAATCTCTCTCCACGACCTCCACAACAATAACAACAACAACAACAACAACCAGATCCAAAACACTCACATGAACCATCTCCACCAACACCAACACCAACTCAACCACACAACCCCTCACTTCGACCCAACTTCCCACGATGACTTCCTCGAGCAAATGCTCTCGAACCTTCCATCTTGCTCCTGGCCAGACCTCAACCCCAACAACAAACCCTTGTGGGACCCAAATCCCTCCAATTCCATCCACAACAACAACGTCAACGCTCACAATCTCAAGCCCTCAGACCTCTCCGACGAAACGCCGCCGTCTAACTCCGAGAATGTCGCTTTCCCCTACGACGAACACGCCACGTTGGCCTCCAAGTTCCGCAACCACCAGATCAGCGCCACTTCTCCGACAACCAAGGCCGCAGCCGCCGCTCTTATGCTTCAGCAGCAGCTCCTCATGTCCAGAGGCGACTCTGGTCTCCTCCAGATGCCGCTGTCGTTGGGTGGAAACAACGTCGTTGACGGTTCATCCTTCAAATCTCCCAATCCGGGTGGTGATGCTTCAGTTCAAGCTCTGTACAACGGGTTCGCGGGATCTCTCCATGGCACCGGTCAAGCCTCTAATCAGACTCAACATTTTCAACATCCTCAGGGGGGTTCGAATCAGATGCAGGGGCAGAATTTTGGTGCTCCAGGTGGTGGGGGAGCAACGAACCAAGCTCCGGCGAGTGGCACCGCCGGTGGAGCCCCGGCTCAGCCAAGGCAGAGAGTTCGGGCCAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCTGAAAGGTTGCGAAGGGAGAGAATCGCAGAGAGAATGAAGGCTCTGCAGGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCATCCATGCTTGATGAGATCATCGATTATGTGAAGTTCCTGCAGCTCCAAGTCAAGGTTCTAAGCATGAGCAGATTGGGTGGTGCAGCTGCTGTCGCCCCTCTCGTTGCTGATATGTCCTCTGAGGGAGGCGGTGATTGCATCCAAGCCAAAGCAAACGGCAACAGCAACGGCGGTGGGGCCCTCCCTGGCAACGCAAACGGTAATCAAACGGCGGCGTCAACCTCAAACGACAGCCTCACCATGACGGAGCACCAGGTGGCCAAGCTCATGGAGGAGGACATGGGCTCCGCCATGCAGTACCTCCAGGGCAAGGGCCTTTGTCTCATGCCCATCTCCCTCGCCACCGCCATCTCCACCGCCACGTGTCACACCAGGAACCCCTTGATCAACAGCACCGCCGGAAACCAGATCCCGAACAACAACGGAGGCGTCGGAGGCTCCCACACGAACCCTGCCGTCGCATCCAACGGCGAAGGGCCGTCATCTCCGAGCATGTCCGTGCTGACGGTGCAGTCGGCCGTCGTGGGTAACGAGGGTGCCGTCAAAGACGCTGCCTCCGTTTCGAAGCCGTGA 1512 0.5681 MQPRSREMQGINSLLNSSQISLHDLHNNNNNNNNNQIQNTHMNHLHQHQHQLNHTTPHFDPTSHDDFLEQMLSNLPSCSWPDLNPNNKPLWDPNPSNSIHNNNVNAHNLKPSDLSDETPPSNSENVAFPYDEHATLASKFRNHQISATSPTTKAAAAALMLQQQLLMSRGDSGLLQMPLSLGGNNVVDGSSFKSPNPGGDASVQALYNGFAGSLHGTGQASNQTQHFQHPQGGSNQMQGQNFGAPGGGGATNQAPASGTAGGAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQAKANGNSNGGGALPGNANGNQTAASTSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLINSTAGNQIPNNNGGVGGSHTNPAVASNGEGPSSPSMSVLTVQSAVVGNEGAVKDAASVSKP 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4129g00003 503 MobiDBLite consensus disorder prediction 89 125 - -
Gabi4129g00003 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 277 326 IPR011598 GO:0046983
Gabi4129g00003 503 MobiDBLite consensus disorder prediction 446 483 - -
Gabi4129g00003 503 MobiDBLite consensus disorder prediction 214 285 - -
Gabi4129g00003 503 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 75 430 - -
Gabi4129g00003 503 Pfam Helix-loop-helix DNA-binding domain 282 327 IPR011598 GO:0046983
Gabi4129g00003 503 MobiDBLite consensus disorder prediction 89 126 - -
Gabi4129g00003 503 Gene3D - 272 334 IPR036638 GO:0046983
Gabi4129g00003 503 MobiDBLite consensus disorder prediction 370 392 - -
Gabi4129g00003 503 FunFam Transcription factor bHLH66 274 339 - -
Gabi4129g00003 503 MobiDBLite consensus disorder prediction 45 65 - -
Gabi4129g00003 503 MobiDBLite consensus disorder prediction 214 259 - -
Gabi4129g00003 503 SMART finulus 283 332 IPR011598 GO:0046983
Gabi4129g00003 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 275 337 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4129g00003 Gabi-Chr4129 59961 63963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4129g00003 256 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 60.606 8.17e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4129g00003 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4129g00003 - - gmx:100807286 574.318