Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4124g00057 ATGGACATGGACATGGACATGGACATGGACATCGTCATGGATGGTATTGTCCCGGATCTCCTCGACTTCTCCGGTTACAGTACCACCACCCCTACTTCCGACGACGATGCCGGCTGTAACTGGAGCCAATGGTCCCCACTCGTCAACTGGGAATGCTTCACCGGCGACCAAGACGACTTCCACGGCCTCATTGACTCTATCATGGCAGATCACGGCGTCGTGCAAGAAGCATCAAGCGGTGACGGCTGCAACTCCGCTTCAACAACCACCACCACCACCACCACGGACGACGACGAAGGCAGCACCGGCGACAACTCGAAGGGCCTCCGGCTGGTTCACCTCCTGATGGCGGCGGCGGAGGCCCTCACCGGAGGCAACAAGAGCCACGACCTGGCTCGAGCGATATTGGTTCGGCTCAAGGAGTTGGTGTCCCCAACAGAAGGCACCAACATGGAGAGGCTCGCGGCGTATTTTACCGAAGCCCTCCAGGGACTGCTAGAAGGCGCCACCGGTGCGCACAGCACAACAACAACAACAACCAACAAACATTACGTCATCAGTGGACCCCACCTCGACCATAACAACCCCCAAACGGACATGCTTGCAGCATTCCAGCTTCTTCAGGACATGTCACCATACGTCAAGTTCGGCCACTTCACAGCCAATCAGGCCATCTTAGAAGCAGTGATCCACGAGCGTAGGGTCCACATCGTCGACTATGATGTCATGGAAGGGGCCCAATGGGCTTCCCTCATTCAAGCACTCTCCTCCCGGAAAGAAGGCCCACCAGGCCCACACCTCCGCATAACCGCATTGTCCAGAGGCAATGGCAGCGGACGCAGATCCATTGCCACCATCCAAGAGACTGGACGGCGCTTGACGGCGTTTGCTGCATCGATCGGGCAACCGTTCTCGTTTCATCAGTGCAGGTTGGACCCCGACGAAACGTTTCGACCGTGTTCTCTGAAACTCGTTCGCGGAGAGGCCTTAATATTCAACTGCATGCTGCACCTGCCACACCTTAGCTACCGCGCACCCGAATCGGTTGCTTCGTTCTTGAATGGTGCCAAGGAGTTGAGCCCGAGACTTGTGACCCTGGCGGAGGAGGAGGTTGGGCCCGTTGGAGATTCCGGTTTTGTGAGCCTGTTCATGGACTCGCTCTACCACTACTCGTCGATGTATGATTCCCTTGAGGATGGGTTTCCCATGCAGGGATGCTCCCGGGCTTTGGTGGAGCGAGTGTTCTTGGGCCCACGAATAACGGGCTCGGTGGCCCGGATATACCGGACGGGTGAGGGTGAGGAAGGGAGAGGGTCGTGGGGGGAGTGGTTGGGTGCGGCGGGGTTCAGAGGAGTTCCCCTAAGCTTCTCGAACCATTTGCAAGCGAAGCTGTTGCTGGGTCTGTTTAATGATGGGTATGAGGTGGAGGAGTTGCGTAACAATAAGTTGGTGTTGCGTTGGAAATCAAGGCGTTTATTTTCGGCCTCTGTTTGGACTTCTATTTTAGACTCTGATTTGTAG 1521 0.5641 MDMDMDMDMDIVMDGIVPDLLDFSGYSTTTPTSDDDAGCNWSQWSPLVNWECFTGDQDDFHGLIDSIMADHGVVQEASSGDGCNSASTTTTTTTTDDDEGSTGDNSKGLRLVHLLMAAAEALTGGNKSHDLARAILVRLKELVSPTEGTNMERLAAYFTEALQGLLEGATGAHSTTTTTTNKHYVISGPHLDHNNPQTDMLAAFQLLQDMSPYVKFGHFTANQAILEAVIHERRVHIVDYDVMEGAQWASLIQALSSRKEGPPGPHLRITALSRGNGSGRRSIATIQETGRRLTAFAASIGQPFSFHQCRLDPDETFRPCSLKLVRGEALIFNCMLHLPHLSYRAPESVASFLNGAKELSPRLVTLAEEEVGPVGDSGFVSLFMDSLYHYSSMYDSLEDGFPMQGCSRALVERVFLGPRITGSVARIYRTGEGEEGRGSWGEWLGAAGFRGVPLSFSNHLQAKLLLGLFNDGYEVEELRNNKLVLRWKSRRLFSASVWTSILDSDL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4124g00057 506 ProSiteProfiles GRAS family profile. 102 499 IPR005202 -
Gabi4124g00057 506 MobiDBLite consensus disorder prediction 76 105 - -
Gabi4124g00057 506 MobiDBLite consensus disorder prediction 78 99 - -
Gabi4124g00057 506 Pfam GRAS domain family 111 499 IPR005202 -
Gabi4124g00057 506 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 94 495 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4124g00057 Gabi-Chr4124 650510 652030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4124g00057 80 498 GRAS Transcription Factor Family AT5G17490 34.660 1.36e-52 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi4124g00057 GRAS 4.8e-100 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4124g00057 - - egr:104431927 674.47