Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4124g00053 ATGGTCAAGATAGAGAACAAGATCCACACAGATCCATCAAAGCCAATGCCATCTTTATCTTCATCATCAGCATCAAATGATCACAAAAAGAAGTATAAGGGAGTCAGAATGAGGAGCTGGGGCTCATGGGTATCAGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGTTGGGATCTTATTCAACAGCAGAAGCAGCAGCAAGAGCCTATGATGCTGCACTTCTATGCCTTAAAGGCTCCTCTGCCAATCTCAACTTCCCTCTGAGTTCTTCACATTACATTCCTCAAGACACTGTCATGTCCCCCAAATCAATCCAAAGAGTAGCTGCTGCTGCTGCTGCTAAGAGTTTTGTGGACAATGCTAACACCCTACCTTCCCCTCCTCCTGCTTCCACCTCATCATCATTGGTCTCATCCCCATCAATGTTATCCTCTCCTCCTGATCAAATAGATGATGATGTTTCACTACTGTCATCCTTTGGGGCCTACCCTAGCTATGATCAAGCAAATGAATCAATGGATATGATGGAATCTTGGTATGGCTTTGATGACCTACAATCCCCAAAATATGTTGATCATATGCTAAATGGGGCATTGTTTGATATTGATTCAACACAGCTACTTGATGATCTGTATGAAGAAAGTGACATTCGCTTGTGGAGTTTCTGCTGA 675 0.4281 MVKIENKIHTDPSKPMPSLSSSSASNDHKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPLSSSHYIPQDTVMSPKSIQRVAAAAAAKSFVDNANTLPSPPPASTSSSLVSSPSMLSSPPDQIDDDVSLLSSFGAYPSYDQANESMDMMESWYGFDDLQSPKYVDHMLNGALFDIDSTQLLDDLYEESDIRLWSFC 224
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi4124g00053 224 Gene3D AP2/ERF domain 30 90 IPR036955 GO:0003700|GO:0006355
Gabi4124g00053 224 SUPERFAMILY DNA-binding domain 31 90 IPR016177 GO:0003677
Gabi4124g00053 224 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Gabi4124g00053 224 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Gabi4124g00053 224 MobiDBLite consensus disorder prediction 1 32 - -
Gabi4124g00053 224 MobiDBLite consensus disorder prediction 122 149 - -
Gabi4124g00053 224 CDD AP2 30 90 IPR001471 GO:0003700|GO:0006355
Gabi4124g00053 224 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Gabi4124g00053 224 FunFam ethylene-responsive transcription factor ERF014-like 30 90 - -
Gabi4124g00053 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 171 - -
Gabi4124g00053 224 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Gabi4124g00053 224 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi4124g00053 Gabi-Chr4124 574864 575538 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4124g00053 32 223 AP2-EREBP Transcription Factor Family AT1G21910 54.680 5.07e-50 161
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi4124g00053 AP2 4.5e-12 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4124g00053 - - pvu:PHAVU_009G123300g 280.796