Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4124g00042 ATGGAGGACTCAGGCAATCTCAGCACACCGAAGCGCAGAAAAAGAGTGGAAGAAGAGCAAGGTTACTGTTCAGGCCAGAACAACAACAAGAAAAGGAAGTCCCCTGGAAAAGTTACTCCACGAAAACGAAGTTCCAAGAATAACACACCAAAGAAAAATGTGTCCCCTAATGGAATTAAGGGAACTGTTTCACCTGACTCAGCTCAGAAGATTGATTTGCGTTTGGAGGCTAAATTGGCAGCTGAGGAAAATTCAAGAATGTTTGCAGGACGGCCAACGCATCCATTTTTTTCATTGTGGAAGCTGGGGAAGAAATTTCAGGAATCAGATGATTCAGAACGTAGTTCATGCACAGCTAAGAGTGAGGATGGAAGAATTACCTGTGGTCCTATTCATGTATTTCAAAATACTCAGGCTGATACTTCATCCTTTGACTGGAGTGGCTGGACATTTTTGGCGAAGACCACCATTGCAGATTGTGGTCCAGAAAATTCAAATTTATCTGTTATGGAGGGTTCTGTTGAATTCTTAAATTTTGATAACTTCTTTAGTGCTTTAAAACACTCCAGTGCTTTAACTTCTCAGAATACCTTGTCTTGTTCAGATCAACTTTCTATGCTGCCAGATAATATGCTGGAAATATCACCAGAAAACTCAGCTGTGCTAGCTAATGAGCAAACAACATGCCCTCGGAAGCCAAAATATGCCAAAGTGGATTTGGAGGTGAATGAAGTCAGAACTTTTTCAGAGCAAGAAGGCATTTTCATAAAGTCGGATACTGAGCCACTGAGTAGATTTCTTCAAGAAAGAATGAGGTCTTACTACCGTAGTTGTAAAGAGAAGGCTGAGGGCAGCTTATGGACACACAAGTATAAGCCAACAAAGGCCACTGAGGTGTGCGGTAATGGTGAATCTGTGAATCTCTTTCGTGACTGGTTACATCTCTGGCGTGAAAGGCGTCATAAAAGCAGAGAGGATTCCTCTAACAGGGATCAATGTGACATACAAGACAATGATGATGATTATAACTGTTCTGATAATGATTATGCTTCACAAGATATTAATGAGGAGGATTCTCTGCAGAATGTTCTTTTAATTACGGGACCAATTGGGAGTGGCAAGTCTGCAGCTGTCTATGCTTGTGCCCAAGAGCAAGGATTTGAAGTTTTAGAGCTCAATGCATCAGACTGTCGGAATGGGGTTGCTGTCAAACAGTATTTTGGAGATGCTCTTGGATCACATGGGTTCAAAAGGTTAGTGGAACCCACTGTGTGTTCACCCAAGGAAACTGTGAAATTATCCCCAGCTCCAACTTTGCCAAATGGTAAAGCAGCAGAAGAGATGGACGATGGTGTGATTGATCTCATAACCATATCTAATGATGGAGGTCATAGTCCTGGTGGAACATCTGAGAGGTTTCATGGCCAAAATAATGCATTTACATTTGATAATGTACAAACTTTAATTTTAGTTGAGGATGTGGACATTCTTTTTCCTGAAGATCGTGGATGTCTTGCTGCCATACAACACATTGCTGAGACAGCAAAAGGGCCAATTATATTGACCAGCAATAGTAATAATGCTGGCCTGCCAGACAATTTTGTTAGACTACATGTTTCTTTCTCATTGCCATTGCCAGATGAGTTGCTTTGCCATTTGTACATGGTTTGTGTCACGGAAGAAATCAATATCAGTCCTCTTTTACTCCGGAGGTTTATGCAGTCTTGCAATGGAGATATTCGTAAAACCATTATGCATCTTCAGTACTGGTTCCAGAGTAAAAAATATAGAGACAAGGAAGTGAAGACAGTGTATGGCTCGCTTCCATTTGATCTTGAGGCTGGTCATCAGATACTACCAAAGATAATACCCTGGAGTTTTCCCTCAGAGTTATCCAAACTAATTGAGAAGGAAGTTGCCAAGTCTGTAACCATAATGGAAGAAAACTCATGCTTTCAGGGGTTAGTGAAGAAAGAGCTTCACATAAATGAAAGGCAAAATGACTTAAATGTGCAGTGTATGGGGACTGATTATTTAGAGGCTAAGAAGGTAGAGATGATCAAGAGGAATAGATCTATTACAGACTGCAGTCGGTTCGAAAATCAATATAGTGCTCTTTCTGAGCTTTCTAATTGTTCTGGATCCCCAGTGCAGAAGGGCCAAAGGAAACGTGTAGCGATGCCCTCTGATTCTGAGGATAAGGGTTCAAATAAAGGACATTCTCTAAACTTTCAAGATGAAGCTTACAAGAGACAATCCCTTGAAGGTAACAGTGAATCTCCCTATAAGTTTCAATTGGATCAAAGGTACACCGGTAAGTCATTTTGCAAGCTGGTTAGTTCTGGTTTGGAGGATTCGGGGGAGGAACAGTGTAAATATTTAGAGACAGCTTATGATGCACTCTTAAATGAAACACACAAATCATTTGATATATCATGTTTGCCAGAATCAATATTTGTTCCTGAGACTGCAAGTCAAAATGGAATAGAGACAATGTCTAGAGCAGTGTCTTCTACCCATCTTGCTGATCCGGTAGAAGTTTCTCTGAATAATGAGCTGACACCATTCACTTTCAGTGTTTGTCAGCGCTTAACCAAACTGCCACCAAATTCGGATTCATTGGTGAATACTGAATCTTCTCCAAAAGCTGTTGTGCATGATTTTCGAGATAAGAACATGGAAACTGCAATTTTCTATAATGGGACGGATGATGGCAGTCATGCTGATTTAAAACTGAAGTCGAGGTTTGTTGAGTCTAGTCCATCTATGGAGACAGATATGGTGCAAAGTTTATGGAGGAAACTCCGTGGTTGTCAAATGGATTTAAGACAACATTCAACCTCAGAACAGCTAGGTGCTATTCAAGTTGTTAAACTTGCTAGTGGGCTGAGCAATCTAATTTCAGAAGCTGACTTGTTGTTTCGTAATCACCAACAAAAACAATGTGGTATTATGGAACATCCAATGTTCCTTTCTGATGAAGCCACATTTAGTTGGTATGATGAGCAAATGATGATGTCTACTGTTGCTGTACATGGTTTTTGTTTTTATGCCAAACATATATCAGAAGTGGGATCAAAGTTGGGATGTGAGAACAGGGTAGATGTAACTTCAGAGATGTTGGCTTCCACTACTAATATTATGGCATTGGGGAAGTTATCTAGACAGGACCACACAAAAAGCATGAGTATAAAGCAATTAGAGGTGAACAATCCAGGAATTGATACGAAGAGTGAAAACAGAAAATCTCTGTTCAACGTGGTCCAGTCCATTGTTCCTGCAAGATTATCATTGGCATTGAAAGGTGTTGCATTCAATGAATATCTATCTTCACTACGCCAAATTTCAATTTCAGAAGGTGTCCGCATTTCAAAAGGTGTTGAAAAGATGAGAAAAGGAAGGAGGCGTAGTTCTCAACATTATTTGAGTGGAGGTACAATGTTGTCTCCTGAAGATATATCATTGGTGTGTGAAGGTGATTTATACAGAAAGATTTCTTCACAATATACCGCTAACATGGAAAGTAACTTTCAAGATTAA 3540 0.4008 MEDSGNLSTPKRRKRVEEEQGYCSGQNNNKKRKSPGKVTPRKRSSKNNTPKKNVSPNGIKGTVSPDSAQKIDLRLEAKLAAEENSRMFAGRPTHPFFSLWKLGKKFQESDDSERSSCTAKSEDGRITCGPIHVFQNTQADTSSFDWSGWTFLAKTTIADCGPENSNLSVMEGSVEFLNFDNFFSALKHSSALTSQNTLSCSDQLSMLPDNMLEISPENSAVLANEQTTCPRKPKYAKVDLEVNEVRTFSEQEGIFIKSDTEPLSRFLQERMRSYYRSCKEKAEGSLWTHKYKPTKATEVCGNGESVNLFRDWLHLWRERRHKSREDSSNRDQCDIQDNDDDYNCSDNDYASQDINEEDSLQNVLLITGPIGSGKSAAVYACAQEQGFEVLELNASDCRNGVAVKQYFGDALGSHGFKRLVEPTVCSPKETVKLSPAPTLPNGKAAEEMDDGVIDLITISNDGGHSPGGTSERFHGQNNAFTFDNVQTLILVEDVDILFPEDRGCLAAIQHIAETAKGPIILTSNSNNAGLPDNFVRLHVSFSLPLPDELLCHLYMVCVTEEINISPLLLRRFMQSCNGDIRKTIMHLQYWFQSKKYRDKEVKTVYGSLPFDLEAGHQILPKIIPWSFPSELSKLIEKEVAKSVTIMEENSCFQGLVKKELHINERQNDLNVQCMGTDYLEAKKVEMIKRNRSITDCSRFENQYSALSELSNCSGSPVQKGQRKRVAMPSDSEDKGSNKGHSLNFQDEAYKRQSLEGNSESPYKFQLDQRYTGKSFCKLVSSGLEDSGEEQCKYLETAYDALLNETHKSFDISCLPESIFVPETASQNGIETMSRAVSSTHLADPVEVSLNNELTPFTFSVCQRLTKLPPNSDSLVNTESSPKAVVHDFRDKNMETAIFYNGTDDGSHADLKLKSRFVESSPSMETDMVQSLWRKLRGCQMDLRQHSTSEQLGAIQVVKLASGLSNLISEADLLFRNHQQKQCGIMEHPMFLSDEATFSWYDEQMMMSTVAVHGFCFYAKHISEVGSKLGCENRVDVTSEMLASTTNIMALGKLSRQDHTKSMSIKQLEVNNPGIDTKSENRKSLFNVVQSIVPARLSLALKGVAFNEYLSSLRQISISEGVRISKGVEKMRKGRRRSSQHYLSGGTMLSPEDISLVCEGDLYRKISSQYTANMESNFQD 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4124g00042 1179 MobiDBLite consensus disorder prediction 49 64 - -
Gabi4124g00042 1179 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 16 1167 IPR004582 GO:0006281
Gabi4124g00042 1179 MobiDBLite consensus disorder prediction 1 20 - -
Gabi4124g00042 1179 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 546 606 - -
Gabi4124g00042 1179 Gene3D - 284 541 IPR027417 -
Gabi4124g00042 1179 MobiDBLite consensus disorder prediction 725 740 - -
Gabi4124g00042 1179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 597 IPR027417 -
Gabi4124g00042 1179 MobiDBLite consensus disorder prediction 709 743 - -
Gabi4124g00042 1179 Gene3D - 544 606 - -
Gabi4124g00042 1179 MobiDBLite consensus disorder prediction 34 48 - -
Gabi4124g00042 1179 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4124g00042 Gabi-Chr4124 450629 461117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4124g00042 287 589 Core DNA Replication Machinery Family AT5G22010 22.078 1.48e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4124g00042 K26118 - gmx:100815984 1467.21