Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4124g00040 ATGGATCCTCTCAGTCCTACTATGGCGTATTTATATGACGTTTTTTCCTCTGTTCCTCTATCTTCCGAGTCCCTGGAGTCAATTCTAACTGTTGTAGGTCGACACGCAAGAGATATGATCAGCGACAACATTGAAGGACTTGACATATTGCATATGGATGCGATAGTTTGCACTGCCAATGACCTTAGTGAGGAATATTACGAACATACTATTGATCACCATAGCGTGTTTATATCAACCCTCGTGAATTCCATGGAAAAAGTCAGATTCAATCAAGATGCTTCTTCTAATTTGGATGATACATGTTCTATTTGTTTGGAGAAGCTGAGAGATGGATCAAATTCAAAGCTTGTCCGCACCAAATGCTCGCATGTTTTTCATGAAGATTGTATTACCGAATGGCTTCAGCATTGTATAGCTCATCAATCCTATTCTTGTCCTTTGTGTCGTTGTCAAATTACATATGTTGATTAA 474 0.3882 MDPLSPTMAYLYDVFSSVPLSSESLESILTVVGRHARDMISDNIEGLDILHMDAIVCTANDLSEEYYEHTIDHHSVFISTLVNSMEKVRFNQDASSNLDDTCSICLEKLRDGSNSKLVRTKCSHVFHEDCITEWLQHCIAHQSYSCPLCRCQITYVD 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4124g00040 157 SUPERFAMILY RING/U-box 101 155 - -
Gabi4124g00040 157 ProSiteProfiles Zinc finger RING-type profile. 102 150 IPR001841 -
Gabi4124g00040 157 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 75 151 - -
Gabi4124g00040 157 Pfam Ring finger domain 100 150 IPR001841 -
Gabi4124g00040 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 156 IPR013083 -
Gabi4124g00040 157 SMART ring_2 102 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4124g00040 Gabi-Chr4124 408329 408802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4124g00040 84 151 C3H Transcription Factor Family AT5G41430 44.286 6.09e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4124g00040 - K22378 mtr:112418131 97.0561