Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4124g00036 ATGGCTAACAATCACGTCACCACTGATTCCCCTCTCTCTCGTCGCATAGTTCGTGCCTTCCTTCACTTCCTCAACTCTGTTGAACCTAGCCAAGGGATTGATGATGAAGGGATTGAGGTTGCTAGGGAGTGTTTGGCAGAGGCATTTAAGCTTAACTCATCTCCTGTGACCGGTGATCCTGAGAAATATGATTCATTGATTGACATGTTCAAGTCCCTTGAAGAAGCAAACAAGCAATGTGAAACTAGTAAGTCAGACGTTGGTCCTCAACCAGATTCTGTGGATGCTTCCAGTTCATTCTCTGCTCAGAATCCTGCTCATACTAAAAATAATCCCGAGGCATCGAAATCTACGGATGAAGGTTGGACACAGGATCCTCACATATTTGCAGCATCTAAAGATGAACTCTGTGGACAATTCTTTGCTGCTCTGGAGAAAAATCACTATTTTAGGACCAATGTTGATGGGAGTGATGACCCAGTGCAACTGGAGAAAGCATCTCATTTATTTGATAATGCTTTTATGGAGATGGAAAGATCTGGGTGTCGGGAGTTTAGTTTGAAGAATTTGGCTGAATCCCTAAAATCGCTAGGTAACAAGGCAGTGCAATCCAAGCAATTTCTTGATGCAATTGAGTTGTATAATTGTGCAATTGCGCTCTATGAAAAAAGTGCCGTTTTCTACTGCAACAGGGCAGCTGCTTACACTCAGATTAGCAAATATACAGAAGCAGTCCAAGATTGTCTTAGATCTATCGAGATTGATCCAAACTACAGCAAGGCATACAGTCGTCTGGGTTTAGCTTATTATGCACAAGGAAACTATAGAGATGCTATTGATAAAGGGTTTAAAAAAGCCTTGCAGTTGGATCCGAACAATGAGTCTGTTAAAGAAAATATACGGGTAGCTGAGCAAAAATTGATTGAAGAGCAACATCACGCAGATCATAATCAGAATTCAAGATCATCTCAAGAATCCCAAAACCAATCTGCAAGAGGATCAAGAAGCCATGCAATGCCGCCTCCATTTAACTCAATGCCATTTAATCCCAATGATATTGCAAGCATGTTTATGAACATGGCCGCAAATGCTACAAATGCACATCAGGGGTCGCATCCTCAGGAAAGGCAAGAAGATACCAATACTAGTGGAGCTAATGAACCAGAGATAAGAATGGGGCGCAATGTTAGTGTAAATTTTGACCAAATGCCTGAGCATCTAACAGGGGCCTTTCAATCTGTGATGGAAATGTTATCTAGGACTGTACCTCCTGACCAACCACAAGATCAAACCAATGGAAGAACAGCCGCAAATGCTACAAATGCACATCAGGGGTCGCATCCTCAGGAAAGGCAAGAAGATACCAATACTAGTGGAGCTAATGAACCAGAGATAAGAATGGGGCGCAATGTTAGTGTAAACTTTGACCAAATGCCTGAGCATCTAACAGGGGCCTTTCAATCTGTGATGGAAATGTTTTCTAGGACTGTACCCCCTGACCAACCACAAGATCAAACCAATGGAAGAACAGCACCAAACTAA 1542 0.4235 MANNHVTTDSPLSRRIVRAFLHFLNSVEPSQGIDDEGIEVARECLAEAFKLNSSPVTGDPEKYDSLIDMFKSLEEANKQCETSKSDVGPQPDSVDASSSFSAQNPAHTKNNPEASKSTDEGWTQDPHIFAASKDELCGQFFAALEKNHYFRTNVDGSDDPVQLEKASHLFDNAFMEMERSGCREFSLKNLAESLKSLGNKAVQSKQFLDAIELYNCAIALYEKSAVFYCNRAAAYTQISKYTEAVQDCLRSIEIDPNYSKAYSRLGLAYYAQGNYRDAIDKGFKKALQLDPNNESVKENIRVAEQKLIEEQHHADHNQNSRSSQESQNQSARGSRSHAMPPPFNSMPFNPNDIASMFMNMAANATNAHQGSHPQERQEDTNTSGANEPEIRMGRNVSVNFDQMPEHLTGAFQSVMEMLSRTVPPDQPQDQTNGRTAANATNAHQGSHPQERQEDTNTSGANEPEIRMGRNVSVNFDQMPEHLTGAFQSVMEMFSRTVPPDQPQDQTNGRTAPN 513
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi4124g00036 513 MobiDBLite consensus disorder prediction 365 390 - -
Gabi4124g00036 513 Gene3D Immunoglobulin FC, subunit C 3 76 - -
Gabi4124g00036 513 Gene3D Tetratricopeptide repeat domain 186 340 IPR011990 GO:0005515
Gabi4124g00036 513 SMART tpr_5 191 224 IPR019734 GO:0005515
Gabi4124g00036 513 SMART tpr_5 225 258 IPR019734 GO:0005515
Gabi4124g00036 513 SMART tpr_5 259 293 IPR019734 GO:0005515
Gabi4124g00036 513 MobiDBLite consensus disorder prediction 423 463 - -
Gabi4124g00036 513 SUPERFAMILY TPR-like 190 304 IPR011990 GO:0005515
Gabi4124g00036 513 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Gabi4124g00036 513 MobiDBLite consensus disorder prediction 421 465 - -
Gabi4124g00036 513 MobiDBLite consensus disorder prediction 78 123 - -
Gabi4124g00036 513 MobiDBLite consensus disorder prediction 82 122 - -
Gabi4124g00036 513 PANTHER LD24721P 1 440 IPR047150 -
Gabi4124g00036 513 ProSiteProfiles TPR repeat profile. 259 293 IPR019734 GO:0005515
Gabi4124g00036 513 Pfam TPR repeat 234 273 - -
Gabi4124g00036 513 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 186 338 - -
Gabi4124g00036 513 MobiDBLite consensus disorder prediction 313 351 - -
Gabi4124g00036 513 MobiDBLite consensus disorder prediction 320 335 - -
Gabi4124g00036 513 MobiDBLite consensus disorder prediction 365 388 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi4124g00036 Gabi-Chr4124 301087 311248 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4124g00036 190 329 U-box Gene Family AT3G07370 26.667 3.20e-08 53.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4124g00036 K16365 - gmx:100799770 642.499