LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4124g00035	ATGGCTAACAATCACGTCACCACTGATTCCCCTCTCTCTCGTCGCATAGTTCGTGCCTTCCTTCACTTCCTCAACTCTGTTGAACCTAGCCAAGGGATTGATGATGAAGGGATTGAGGTTGCTAGGGAGTGTTTGGCAGAGGCATTTAAGCTTAACTCATCTCCTGTGACCGGTGATCCTGAGAAATATGATTCATTGATTGACATGTTCAAGTCCCTTGAAGAAGCAAACAAGCAATGTGAAACTAGTAAGTCAGACGTTGGTCCTCAACCAGATTCTGTGGATGCTTCCAGTTCATTCTCTGCTCAGAATCCTGCTCATACTAAAAATAATCCCGAGGCATCGAAATCTACGGATGAAGGTTGGACACAGGATCCTCACATATTTGCATCTAAAGATGAACTCTGTGGACAATTCTTTGCTGCTCTGGAGAAAAATCACTATTTTAGGACCAATGTTGATGGGAGTGATGACCCAGTGCAACTGGAGAAAGCATCTCATTTATTTGATAATGCTTTTATGGAGATGGAAAGATCTGGGTGTCGGGAGTTTAGTTTGAAGAATTTGGCTGAATCCCTAAAATCGCTAGGTAACAAGGCAGTGCAATCCAAGCAATTTCTTGATGCAATTGAGTTGTATAATTGTGCAATTGCGCTCTATGAAAAAAGTGCCGTTTTCTACTGCAACAGGGCAGCTGCTTACACTCAGATTAGCAAATATACAGAAGCAGTCCAAGATTGTCTTAGATCTATCGAGATTGATCCAAACTACAGCAAGGCATACAGTCGTCTGGGTTTAGCTTATTATGCACAAGGAAACTATAGAGATGCTATTGATAAAGGGTTTAAAAAAGCCTTGCAGTTGGATCCGAACAATGAGTCTGTTAAAGAAAATATACGGGTAGCTGAGCAAAAATTGATTGAAGAGCAACATCACGCAGATCATAATCAGAATTCAAGATCATCTCAAGAATCCCAAAACCAATCTGCAAGAGGATCAAGAAGCCATGCAATGCCGCCTCCATTTAACTCAATGCCATTTAATCCCAATGATATTGCAAGCATGTTTATGAACATGGCCGCAAATGCTACAAATGCACATCAGGGGTCGCATCCTCAGGAAAGGCAAGAAGATACCAATACTAGTGGAGCTAATGAACCAGAGATAAGAATGGGGCGCAATGTTAGTGTAAATTTTGACCAAATGCCTGAGCATCTAACAGGGGCCTTTCAATCTGTGATGGAAATGTTATCTAGGACTGTACCTCCTGACCAACCACAAGATCAAACCAATGGAAGAACAGCCGCAAATGCTACAAATGCACATCAGGGGTCGCATCCTCAGGAAAGGCAAGAAGATACCAATACTAGTGGAGCTAATGAACCAGAGATAAGAATGGGGCGCAATGTTAGTGTAAACTTTGACCAAATGCCTGAGCATCTAACAGGGGCCTTTCAATCTGTGATGGAAATGTTTTCTAGGACTGTACCCCCTGACCAACCACAAGATCAAACCAATGGAAGAACAGCACCAAACTAA	1539	0.423	MANNHVTTDSPLSRRIVRAFLHFLNSVEPSQGIDDEGIEVARECLAEAFKLNSSPVTGDPEKYDSLIDMFKSLEEANKQCETSKSDVGPQPDSVDASSSFSAQNPAHTKNNPEASKSTDEGWTQDPHIFASKDELCGQFFAALEKNHYFRTNVDGSDDPVQLEKASHLFDNAFMEMERSGCREFSLKNLAESLKSLGNKAVQSKQFLDAIELYNCAIALYEKSAVFYCNRAAAYTQISKYTEAVQDCLRSIEIDPNYSKAYSRLGLAYYAQGNYRDAIDKGFKKALQLDPNNESVKENIRVAEQKLIEEQHHADHNQNSRSSQESQNQSARGSRSHAMPPPFNSMPFNPNDIASMFMNMAANATNAHQGSHPQERQEDTNTSGANEPEIRMGRNVSVNFDQMPEHLTGAFQSVMEMLSRTVPPDQPQDQTNGRTAANATNAHQGSHPQERQEDTNTSGANEPEIRMGRNVSVNFDQMPEHLTGAFQSVMEMFSRTVPPDQPQDQTNGRTAPN	512

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4124g00035	512	ProSiteProfiles	TPR repeat profile.	224	257	IPR019734	GO:0005515
	Gabi4124g00035	512	PANTHER	LD24721P	1	439	IPR047150	-
	Gabi4124g00035	512	MobiDBLite	consensus disorder prediction	422	462	-	-
	Gabi4124g00035	512	Gene3D	Tetratricopeptide repeat domain	185	339	IPR011990	GO:0005515
	Gabi4124g00035	512	MobiDBLite	consensus disorder prediction	420	464	-	-
	Gabi4124g00035	512	FunFam	Tetratricopeptide repeat (TPR)-like superfamily protein	185	337	-	-
	Gabi4124g00035	512	SUPERFAMILY	TPR-like	189	303	IPR011990	GO:0005515
	Gabi4124g00035	512	Gene3D	Immunoglobulin FC, subunit C	3	76	-	-
	Gabi4124g00035	512	ProSiteProfiles	TPR repeat profile.	258	292	IPR019734	GO:0005515
	Gabi4124g00035	512	Pfam	TPR repeat	233	272	-	-
	Gabi4124g00035	512	MobiDBLite	consensus disorder prediction	78	124	-	-
	Gabi4124g00035	512	MobiDBLite	consensus disorder prediction	312	350	-	-
	Gabi4124g00035	512	SMART	tpr_5	190	223	IPR019734	GO:0005515
	Gabi4124g00035	512	SMART	tpr_5	258	292	IPR019734	GO:0005515
	Gabi4124g00035	512	SMART	tpr_5	224	257	IPR019734	GO:0005515
	Gabi4124g00035	512	MobiDBLite	consensus disorder prediction	319	334	-	-
	Gabi4124g00035	512	MobiDBLite	consensus disorder prediction	364	387	-	-
	Gabi4124g00035	512	MobiDBLite	consensus disorder prediction	364	389	-	-
	Gabi4124g00035	512	MobiDBLite	consensus disorder prediction	82	124	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4124g00035	Gabi-Chr4124	301087	311248	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4124g00035	189	328	U-box Gene Family	AT3G07370	26.667	3.37e-08	53.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4124g00035	K16365		-	gmx:100799770	647.121