Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4124g00020 ATGGAGTATTTGCATGACACTTTTTCCTCTGTTCCTATATCTTCCGAGTCCCTGGACTCAATTCTACCTGCTGTAGGTCGACGCGCAAGACATATGATCATCGGCAACATTGAAGGACGTGACATATTGCAAATGGATGTGATAGTTTGCATTGCCACTGGCCTTAGTGAGGAATATGACGAACATAATATTGATCAGCAGAGCGTGTCTATATCAACCCTTGCGAATTCCTTGGAAAAAGTCACAATCAATCACGATGCTTCTTCTAATTTGGATGATACATGTTCTATTTGTTTGGAGGAGTTGGGCGATGGATCAAATTCAAAGCTTGTCCGCACCAAATGCTCGCATGTTTTTCATGAAGATTGTCTTACCCAATGGCTTCGGTATTGTAACGCTCATCAATCCTACTCTTGTCTCTTGTGTCAGTGTCAAGTTACATATGTTGATTAA 453 0.4128 MEYLHDTFSSVPISSESLDSILPAVGRRARHMIIGNIEGRDILQMDVIVCIATGLSEEYDEHNIDQQSVSISTLANSLEKVTINHDASSNLDDTCSICLEELGDGSNSKLVRTKCSHVFHEDCLTQWLRYCNAHQSYSCLLCQCQVTYVD 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4124g00020 150 ProSiteProfiles Zinc finger RING-type profile. 95 143 IPR001841 -
Gabi4124g00020 150 Pfam Ring finger domain 93 143 IPR001841 -
Gabi4124g00020 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 148 IPR013083 -
Gabi4124g00020 150 PANTHER SI:CH211-59O9.10 76 144 - -
Gabi4124g00020 150 SUPERFAMILY RING/U-box 94 148 - -
Gabi4124g00020 150 SMART ring_2 95 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4124g00020 Gabi-Chr4124 207868 208320 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4124g00020 66 130 C3H Transcription Factor Family AT5G20885 33.846 8.78e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4124g00020 - - psat:127099352 114.005