Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4124g00016 ATGGGACCTGAGAGTATCATTATGGCGTATTTGCATGACACTTTTTCCTCTCTTCCTATGTCTTCCGAGAACCTGGACTCAATTATACTTGCTATAGGTCGACGCGCTACACATATGATCAGCAACAACATTGAAGGAAGTCAGATACTGCAAATGGATGTGGTAGTTCGCATTGCCATTGGCCTTAGTGATATTGATCACCAGAGCGTGTCTATATCAACCCTTGTGAATTCCTTGGAAAAAGTCACAATCAATCAAGATGGTTCTTCTAATTTGGATGATACATGTTCTATTTGTTTGGAGGGGTTGGGTGATGGATCAAACTCAAAGCTTGTTCGCACCAAATGCTCGCATGTTTTCCACGAAGATTGTATTACCGAATGGTTTCAGTATTGTAACGCTCGTCAATCCTATTCTTGTCCTTTGTGTCGTTGTCAAGTTACATATGTTGATTGA 456 0.4079 MGPESIIMAYLHDTFSSLPMSSENLDSIILAIGRRATHMISNNIEGSQILQMDVVVRIAIGLSDIDHQSVSISTLVNSLEKVTINQDGSSNLDDTCSICLEGLGDGSNSKLVRTKCSHVFHEDCITEWFQYCNARQSYSCPLCRCQVTYVD 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4124g00016 151 SUPERFAMILY RING/U-box 95 149 - -
Gabi4124g00016 151 SMART ring_2 96 143 IPR001841 -
Gabi4124g00016 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 150 IPR013083 -
Gabi4124g00016 151 PANTHER SI:CH211-59O9.10 73 148 - -
Gabi4124g00016 151 Pfam Ring finger domain 94 144 IPR001841 -
Gabi4124g00016 151 ProSiteProfiles Zinc finger RING-type profile. 96 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4124g00016 Gabi-Chr4124 156039 156494 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4124g00016 94 147 C3H Transcription Factor Family AT4G12190 43.636 8.85e-10 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4124g00016 - K22378 psat:127099352 103.219