Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4124g00006 ATGTCAAAGTCTCCCTCTCCTGAAAAAAGGCAGTCCATTTACTCTGCTTCTCAGCCTAGGGAATTTAATGAGGCAGCAGCAATGGACGATCCAGAATCTACAATGGCCACAGTTGCTAATTTTGTGGAGCAACTGCATGCCAACTTGTCATCACCGCTTGAGAAAGAACTTATTACAGCACGCTTGCTAGGTATTGCCAGGAGTAGGAAGGATGCAAGGGCACTTATTGGTTCTCATGCCCAAGCCATGCCATTGTTTATAAACATTCTCAGAAATGGAACCACTCTTGCAAAAGTCAATGTTGCTTCCGCTCTCAGTGTCCTGTGCAAAGATGAAGACTTAAGGTTAAAAGTACTTCTTGGTGGTTGTATCCCACCATTACTGTCGCTTTTAAACTATGAATCCACTGCTGCCAGGAAGGCAGCAGCTGAAGCAATATATGAAGTTTCCTCGGGTAGTCTTTCAGATGATCATGTGGGTATGAAAATTTTTGTTACAGAAGGTGTAGTTCCAACCTTATGGAATCAGCTAAATCCAAAGAACAAGGAAGACAAAGTTGTAGAGGGTTTTATTATTGGAGCATTAAGAAATCTGTGTGGTGACAAAGATGGCTACTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATTATTGTGGGTCTCTTGTCTTCAGATAATGTTGTTTCTCAGTCAAATGCAGCTTCTCTATTGGCACGTTTGATGCTGGCTATCGGTGATGGCATCCCCAAAGTAATAGACTCTGGAGCAGTCAAAGCTTTACTTCGACTTGTTGGTCAGGAAAATGATATTTCTGTACGAGCTAGTGCTGCTGATGCCCTCGAGGCTCTTTCTTCAAAGTCTACCATGGCTAAAAAGGCTATTGTTAGTGCAGACGGCATTCCAATCCTTATTGGAGCTATAGTTGCTCCTTCTAAAGAGTGTATGCAAGGTGATGGTGGCCAGGCTCTGCAGGAGCATGCAACTCGAGCTTTAGCCAATATCTGTGGTGGCATGTCTTCTTTAATACTACATCTTGGAGAACTTTCTTGTTCTCCTCGCCTTTCTGCACCAGTTGGTGATATAATTGGTGCTCTTGCTTGTACACTCATGTTCTTTGAGGAAAAAGCTGACGTTGATGAAGAACATTTCGATGCAACTCAGATAGAGGATATTCTAGTAACTCTTTTAAAGCCTCAAGACAACAAGCTAATTCAAGAACGTGTCCTTGAGGCTATGGCTAGCCTATATGGAAACGTCTGTCTCTCAAAGTGGCTCGTTCAGGCAGATTCAAAGAAAGTTCTTATTGGACTTATAACTATGGCTTCTGCTGATGTGCAAGAGTTTCTGATACTTTCATTGAAATGCTTGTGTTGTGATAAGATTGAAATATGGGAGGCCATAAAAAAAAGAGAAGGTGTCCAATTACTGATATCATTACTGGGGTTATCCAGTGAGCAACATCAAGAGTACTCAGTTCAATTGCTAGCAATTTTAACTGACCAGATTGATGACAGCAAATGGGCAATCACTGCTGCTGGAGGGATTCCATTATTGGTGCAGTTGTTGGAGACAGGATCACATAAAGCAAGAGAGGAAGCAGCTAATGTTCTCTGTCGTTTGTGCTGTCACAGTGAAGATATTCGTGCTTGTGTTGAAAGTGCTGGAGCCATCCCAGCATTTTTGTTTCTTCTTAAGAGTGGTGGACCAAAAGGAAAAGAAGCTTCTGCTATGGCACTCACAAAGCTTGTCCGAGTAGCTGATTCTGCCACAATTAATCAATTATTAGCATTGCTCCTGGGGGATTCTCCAAGCTCGAAGGCCCATATAATCCGAGTTTTAGGTCATGTACTTACCGTGGCTGCACAGAAGGATCTCCTTCAAAAGGGTTTTGCAGCTAATAAAGGCTTGAGATCTCTTGTTCAAGTTCTAAATTCATCAAATGAGGAAACCCAAGAATATGCAGCTTCAGTCCTAGCTGATTTATTTATCACAAGACAAGACATTTGTGATAGTCTCGCAACTGATGAGATTGTGCTTTCTTGCATGAAGCTTTTGACTAGCAAAAATCAAGTTGTCGCCACTCAGTCAGCTCGAGCATTAAGTGCTCTGTCCCGCCCAACAAAGAGCAAAGCTGCAAACATGATGTCTTATATTGTAGAGGGTGACATCGAGCCACTAATCAAGCTGGCTAAAACATCATCTGTTGATTCTGCTGAAACTGCTGTTGCTGCATTGGCCAATCTTCTCTTCGATCCTTTTATTGCTGCTAAGGCTCTAGCTGAAGATGTTGTTTCAGCTTTAACAAGAGTTCTGGCAGAGGGAAGCTTGGAAGGTAAACAAAATGCATCTCGTGCACTTCATCAATTATTGAAACATTTTCCAGTAGGTGACATTCTCAAGGGGAATGCTCAATGCCGTTTCACTGTGCTTGCACTTGTTGATTCCTTAAGAGCTATGGATATGAATGGAGCTGATGCTGCAGATGCTTTAGAAGTAATTGCACTGCTAGCCAGAACTAAACAAGGTGTCAACTTCACTTACCCTCCTTGGTCAGCTCTGGCTGAAATACCATCAAGCTTAGAACTTCTTGTCTGCTGCCTGGCTGAGGGGCCATCCCTTGTGCAAGACAAGGCAATTGAGATTCTGTCTAGACTTTGTGGAGATCAGCCAGTTGTTCTTGGTGATTTATTATCTGCTAGTTCTAGATCCATTGGTTCATTGGCTAATAGAATAATGAACTCCTCCAGTTTAGAAGTAAAAGTTGGAGGGGCTACATTACTAATTTGTGCTGCAAAGGAGAAGAAAGAGCTTTCAATGAATTCACTTGATGCTTCTGCCTATCTAGATCCTTTAATATGTTCTTTAGTTGATATGATGAAGCAGACTTGCGGCTGTTCTTCATTAGAATTTGAAGTTTGCACTTCTAGAGGTTTTATGAAGAGAAATGCATTTCAAGAAGTTGATGAGTTCGATACTCCTGATCCAGACACAGTCTCGGGAGGTACTGTTGCTGTGTGGTTGCTCTCAATTATTGCCTCTTTCCATATAAAAAGCAAGATCACAATTATGGAAGCTGGTGGACTTGAAGCGCTCTCTGACAAACTTGCGAGACATACTTCAAATCCACAGGCAGAATATGAGGATACAGAAGGAATATGGATCAGTGCCTTGCTCTTGGCCATTTTATTTCAAGATACAAACATTGTTCTATCTCCTGCAACATTGCGCATTATACCTTCTATCACTCTTCTGCTAAGATCCGATGAAGTAATTGATAAATATTTTGCTGCTCAGGCATTGGCTAGTCTTGTTTGTCATGGTAATAAGGGAATCGATCTTGCCATTGCAAATTCTGGGGCTGTTGCTGGATTGATAACTATTATTGGGCATATAGAGTCAGATATGCCAAATCTCATGGCTTTATCAGAAGAATTTTCTTTGGTGCAAAACCCTGATCAAGTTGTCTTGGATCACCTTTTTGAAATTGAAGATGTAAGAGTGGGATCTACTGCACGGAAATCTATACCCCTCCTGGTGGATCTCTTGAGACCAATACCAGAAAGGCCTAGTGCTCCACCCATAGCTGTTAGACTCTTGATATCCATTGCAGACGGAAGTGATACAAATAAATTAATCCTTGCTGAAGCTGGAGCTCTGGAAGCTTTGAACAAATACCTGTCCTTGAGCCCTCAAGACTCAACCGAGTCCGCTATTTCAGAGTTATTGAGAATATTATTTTGCAATTCTGACCTTGTTAAACATGAAGCATCAACAAGTACATTGAACCAACTGATCGCTGTTTTGCGTCTTGGATCAAGAAATGCTAGATATAATGCAGCAAGAGCACTTCATGAACTTTTTGATGCTGATAACATTAGGGACTCAGAATTAGCTAAACAGGCCATTCAGCCATTGGTTGACATGCTTAGCACAACATCAGGGAGTGAGCAGGAGGTTGCTCTCATGGCCTTGATCAAGTTAATTTCTGGAAATTCTTCAAGAGCATCTCTTTTTACAGATGTAGAAGGGAATCCACTTGAAAGTTTGTATAAAATATTGTCTTCTTCTTCATCATTGGAACTGAGGAGCCATGCTGCACAACTATGCTTTACTCTTTTTGGTCATAGCAAGATCAGAGCAGATCCAGTTGCCTCAGAATGCCTAGAACCCCTTATATCACTGATGCAGTCTGGTTCTGGGACAGCAATAGAATCTGGGGTTTGTGCTTTCGAGAGATTGTTGGAAGATGAACATCAGGTAGAGCTTGCAGCAGCCTATAATGTTGTGGATCTCCTTGTCAGCTTGGTTTCTGGTACAAACTATCAGCTTATTGAGGCTACCATATCTGCTCTCATCAAATTGGGCAAAGACAGGACACCAAGCAAACTAGACATGGTCAAAGCTGGCATTATTGATAATTGTCTCAAGCTACTCCAATTAGCACCTAGCTCATTATGCTCCACAATAGCTGAGCTGTTTCGCATTTTAACTAATAGTAATGTAATTGCTAGAAGTTCAGATGCTGCAGAAATTGTAGAACCCCTTTTCCATGTTTTGCTCCGTCGAGATTTTAACTTGTGGGGACAGCATAGTGCCTTACAAGCACTCGTAAATATATTGGAGAAACCACAAAGTCTTGCAACCTTAAAGCTTACACCTAGCCAAGTTATTGAACCCTTAATTTCTTTTCTGGAATCCCCATCCCAAGCTATTCAGCAGCTTGGCACAGAACTGTTATCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATTACAACGAAGAATGCAGTTGTGCCTCTCGTACAGCTTGCAGGAATTGGAATATTAAACTTACAACAAACAGCTATAAAAGCATTGGAAAAAATTTCCACAAGCTGGCCAAAGGCAGTAGCTGATGCAGGAGGTATTTTTGAGCTTGCAAAGGTTATTATTCAAGATGACCCTCAGCCACCGCATGCACTCTGGGAATCAGCTGCTTTAGTTCTCTGTAATGTGTTACGATCCAATGCTGATTACTATTTTAAAGTTCCTGTGGTGGTTCTTGTAAAACTCTTGCACTCAACACTTGAGAATACAATTAGCATAGCCCTTAATGCTTTAGTAGTTCATGACAGAAGTGATGCTTCAAGTGCTGAACAGATGATGGAAGCTGGAGCTATAGATGCTCTTTTGGACCTTTTAAGATCCCATCATTGTGAAGAAGCATCTGGTAGATTACTCGAAGCTTTATTTAACAATGTGAGAGTACGAGAGATGAAGGTATCGAAGTATGCTATAGCGCCTCTATCCCAGTATCTGTTAGATCCACAAACCAGATCTCAGTCTGGCAAGCTTCTTGCTGCTTTAGCTCTGGGCAATATTTCCCAGCATGAAGGACATGCTAGAGCTAGTGACTCTGTTTCTGCTTGTCGTGCATTGATAAGTTTACTTGAAGATCAGCCAACTGAAGAAATGAAGATGGTGGCTATATGTGCATTGCAAAACTTTGTCATGAACAGCAGGACCAACAGACGAGCTGTTGCGGAAGCTGGGGGCATACTGGTGATTCAGGAATTGCTACTGTCTTCTAATATAGAAATTGCTGGGCAAGCAGCATTACTGATCAAATTTTTGTTTTCTACCCACACACTGCAAGAATATGTGTCAAATGAGCTGATAAGATCTTTGACAGCTGCCCTTGAAAGAGAGTTGTGGTCAACTGCCACAATCAATGAAGAGGTTTTGAAAACTTTGCATGTGATATTCAAGAACTTCCCTAAGCTCCACATATCTGAAGCAGCAACCCTTTGCATACCTCATTTAGTAGGGGCACTTAAATCTGGTGGTGAAGTTGCTCAAGACTCTGTACTTGACACCTTTTGCTTGCTAAAACATTCTTGGTCAACTATGCCAATAGATATAGCAAAGTCCCAAGCTATGATTGCTGCTGAAGCCATCCCCATCTTGCAAATGCTCATGAAAACTTGCCCACCAAGTTTCCATGAGAGGGCAGATGCTCTTCTGCACTGCTTACCAGGTTGTTTGACTGTTACCATTAAGCGTGGAAACAACCTCAAGCAAACTATGGGAAGCACTAATGCATTCTGCCGGTTGACAATAGGCAATGGTCCTCCGAAACAAACCAAGGTAGTGAATCATAGTACTTCTCCAGAATGGAAAGAAGGATTCACATGGGCATTTGATGTGCCTCCAAAGGGCCAAAAGCTCCATATCAAATGCAAAAGCAAGAATACTTTTGGGAAGACAACTCTTGGAAGAGTCACTATCCAAATTGATAAAGTTGTGACCGAAGGGGTTTGTAGTGGATTATTCAGTCTTAATCATGACGGCAACAAAGATGGTTCTTCCCGAACACTTGAAATTGAGATTATATGGTCTAACAGGATTTCTAATGATGATATTTGA 6408 0.4165 MSKSPSPEKRQSIYSASQPREFNEAAAMDDPESTMATVANFVEQLHANLSSPLEKELITARLLGIARSRKDARALIGSHAQAMPLFINILRNGTTLAKVNVASALSVLCKDEDLRLKVLLGGCIPPLLSLLNYESTAARKAAAEAIYEVSSGSLSDDHVGMKIFVTEGVVPTLWNQLNPKNKEDKVVEGFIIGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNVVSQSNAASLLARLMLAIGDGIPKVIDSGAVKALLRLVGQENDISVRASAADALEALSSKSTMAKKAIVSADGIPILIGAIVAPSKECMQGDGGQALQEHATRALANICGGMSSLILHLGELSCSPRLSAPVGDIIGALACTLMFFEEKADVDEEHFDATQIEDILVTLLKPQDNKLIQERVLEAMASLYGNVCLSKWLVQADSKKVLIGLITMASADVQEFLILSLKCLCCDKIEIWEAIKKREGVQLLISLLGLSSEQHQEYSVQLLAILTDQIDDSKWAITAAGGIPLLVQLLETGSHKAREEAANVLCRLCCHSEDIRACVESAGAIPAFLFLLKSGGPKGKEASAMALTKLVRVADSATINQLLALLLGDSPSSKAHIIRVLGHVLTVAAQKDLLQKGFAANKGLRSLVQVLNSSNEETQEYAASVLADLFITRQDICDSLATDEIVLSCMKLLTSKNQVVATQSARALSALSRPTKSKAANMMSYIVEGDIEPLIKLAKTSSVDSAETAVAALANLLFDPFIAAKALAEDVVSALTRVLAEGSLEGKQNASRALHQLLKHFPVGDILKGNAQCRFTVLALVDSLRAMDMNGADAADALEVIALLARTKQGVNFTYPPWSALAEIPSSLELLVCCLAEGPSLVQDKAIEILSRLCGDQPVVLGDLLSASSRSIGSLANRIMNSSSLEVKVGGATLLICAAKEKKELSMNSLDASAYLDPLICSLVDMMKQTCGCSSLEFEVCTSRGFMKRNAFQEVDEFDTPDPDTVSGGTVAVWLLSIIASFHIKSKITIMEAGGLEALSDKLARHTSNPQAEYEDTEGIWISALLLAILFQDTNIVLSPATLRIIPSITLLLRSDEVIDKYFAAQALASLVCHGNKGIDLAIANSGAVAGLITIIGHIESDMPNLMALSEEFSLVQNPDQVVLDHLFEIEDVRVGSTARKSIPLLVDLLRPIPERPSAPPIAVRLLISIADGSDTNKLILAEAGALEALNKYLSLSPQDSTESAISELLRILFCNSDLVKHEASTSTLNQLIAVLRLGSRNARYNAARALHELFDADNIRDSELAKQAIQPLVDMLSTTSGSEQEVALMALIKLISGNSSRASLFTDVEGNPLESLYKILSSSSSLELRSHAAQLCFTLFGHSKIRADPVASECLEPLISLMQSGSGTAIESGVCAFERLLEDEHQVELAAAYNVVDLLVSLVSGTNYQLIEATISALIKLGKDRTPSKLDMVKAGIIDNCLKLLQLAPSSLCSTIAELFRILTNSNVIARSSDAAEIVEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQDDPQPPHALWESAALVLCNVLRSNADYYFKVPVVVLVKLLHSTLENTISIALNALVVHDRSDASSAEQMMEAGAIDALLDLLRSHHCEEASGRLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGKLLAALALGNISQHEGHARASDSVSACRALISLLEDQPTEEMKMVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSSNIEIAGQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHVIFKNFPKLHISEAATLCIPHLVGALKSGGEVAQDSVLDTFCLLKHSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADALLHCLPGCLTVTIKRGNNLKQTMGSTNAFCRLTIGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLHIKCKSKNTFGKTTLGRVTIQIDKVVTEGVCSGLFSLNHDGNKDGSSRTLEIEIIWSNRISNDDI 2135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4124g00006 2135 SMART C2_3c 2008 2104 IPR000008 -
Gabi4124g00006 2135 CDD C2 2009 2099 - -
Gabi4124g00006 2135 SMART arm_5 502 542 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 1708 1746 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 710 750 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 1206 1246 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 1747 1790 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 1288 1329 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 287 336 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 1834 1874 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 156 200 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 111 151 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 544 584 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 201 242 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 623 663 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 458 500 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 1543 1584 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 1416 1456 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 1458 1498 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 244 285 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 751 791 IPR000225 GO:0005515
Gabi4124g00006 2135 SMART arm_5 670 705 IPR000225 GO:0005515
Gabi4124g00006 2135 Gene3D - 1345 1606 IPR011989 -
Gabi4124g00006 2135 Gene3D - 367 626 IPR011989 -
Gabi4124g00006 2135 MobiDBLite consensus disorder prediction 1 19 - -
Gabi4124g00006 2135 MobiDBLite consensus disorder prediction 1 24 - -
Gabi4124g00006 2135 Gene3D - 191 366 IPR011989 -
Gabi4124g00006 2135 ProSiteProfiles C2 domain profile. 1988 2105 IPR000008 -
Gabi4124g00006 2135 Gene3D - 627 829 IPR011989 -
Gabi4124g00006 2135 Pfam C2 domain 2008 2106 IPR000008 -
Gabi4124g00006 2135 Gene3D - 1609 2007 IPR011989 -
Gabi4124g00006 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Gabi4124g00006 2135 Gene3D - 860 1144 IPR011989 -
Gabi4124g00006 2135 Gene3D - 14 190 IPR011989 -
Gabi4124g00006 2135 SUPERFAMILY ARM repeat 1175 1545 IPR016024 -
Gabi4124g00006 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Gabi4124g00006 2135 SUPERFAMILY ARM repeat 471 1121 IPR016024 -
Gabi4124g00006 2135 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 11 2129 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Gabi4124g00006 2135 SUPERFAMILY ARM repeat 1557 2000 IPR016024 -
Gabi4124g00006 2135 Gene3D C2 domain 2008 2133 IPR035892 -
Gabi4124g00006 2135 SUPERFAMILY ARM repeat 72 308 IPR016024 -
Gabi4124g00006 2135 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2006 2112 IPR035892 -
Gabi4124g00006 2135 Gene3D - 1163 1344 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4124g00006 Gabi-Chr4124 42858 54011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4124g00006 459 573 U-box Gene Family AT5G67340 36.522 2.62e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4124g00006 - - aprc:113846793 3690.97