Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4124g00002 ATGGAACGTGAAGAAGACAAACAATCTCCTCAAAAAAACCCTTACACTCAACTTGAACAAGTTAGCTCTGATTTTAATCTAGCAATTGGCTTGCAAGAGCAAAATGGAACATTCACAGCATTTGAAAGTGAAAGTGACTCATCTTTTGATAATGATGATGATGATGGGGATGCTGATTTTTTCCTGAGCCAAGAGTTTGAAACGGACCTTCAGTTTCTTGAGAGTGAAGGAAACAATGATGATGATGATGATGATGATGATTATGATGAAGAAATGGAAGAAGATGATATTGATGTAGATGAATTGACTTATGAAGAGTTGATTGAGTTGGGAGATTTTATAGGAAAAGAGAAAAGGGGTTTATCAGCAAATGAAATTTCTTCATGCTTGCATTCTTATACTTGTCATTCTGCTAAAAACAAAAGTGGAATCGACCGCTGTGTAATTTGTCAAGTTGAATATGAAGAAGGTGAAGACATGGTGGCACTTCACTGTGACCACCCTTATCATGAAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGCCCAATATGTAACATTGAAATTTCAGTTCCCAATATGGTCAATTAA 597 0.3585 MEREEDKQSPQKNPYTQLEQVSSDFNLAIGLQEQNGTFTAFESESDSSFDNDDDDGDADFFLSQEFETDLQFLESEGNNDDDDDDDDYDEEMEEDDIDVDELTYEELIELGDFIGKEKRGLSANEISSCLHSYTCHSAKNKSGIDRCVICQVEYEEGEDMVALHCDHPYHEDCISKWLQIKKVCPICNIEISVPNMVN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4124g00002 198 Pfam Ring finger domain 146 188 IPR001841 -
Gabi4124g00002 198 MobiDBLite consensus disorder prediction 1 95 - -
Gabi4124g00002 198 FunFam E3 ubiquitin ligase BIG BROTHER-related 113 194 - -
Gabi4124g00002 198 MobiDBLite consensus disorder prediction 74 95 - -
Gabi4124g00002 198 MobiDBLite consensus disorder prediction 46 62 - -
Gabi4124g00002 198 SUPERFAMILY RING/U-box 106 194 - -
Gabi4124g00002 198 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 51 191 IPR033276 GO:0004842|GO:0016567|GO:0046621
Gabi4124g00002 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 194 IPR013083 -
Gabi4124g00002 198 ProSiteProfiles Zinc finger RING-type profile. 147 188 IPR001841 -
Gabi4124g00002 198 SMART ring_2 147 187 IPR001841 -
Gabi4124g00002 198 MobiDBLite consensus disorder prediction 11 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4124g00002 Gabi-Chr4124 21322 21918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4124g00002 82 191 C3H Transcription Factor Family AT3G63530 45.133 1.23e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4124g00002 K19045 - gmx:100780686 259.996