Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4120g00038 ATGAAAGTCCGGTCGGTGAAGCTGAGGGATGCCCACGCCCACAAGGGTGGCCGCCCTTCCTTCTGCTCCGTCGTGTGGGACCAGCAAGCCAAACATCTGGTCACCGCCTCCTCTTCCGACGTGTCCATTTCAATCCACGACCCTCTTCTCCCCTCCGCCACTCCCAGGATCCTCCGTCACCACCGCGACGGTGTCACCGCCTTGGCTCTTAGCCCCAATTCTACTTGCCTTGCTTCCGGATCCGTCGATCACTCCGTCAAACTCTATAAGTTCCCTGGTGGAGAGTTTGAGACAAATATTACGAGGTTTACACTTCCAATACGTTCTCTGGCGTTTAACAAATCAGGGAGCATGTTGGCGGCGGCTGGTGATGATGAGGGTATCAAGCTTATAAATACAGTTGATGGTTCCATTGCTAGGGTTCTCAAAGGGCATAAAGGTTCTGTTACTGGCTTAGCTTTTGACCCTAACGGTGAATACTTAGCGTCTCTGGATTCTACTGGAACTGTTATTTTTTGGGAACTACACTCTGGGAGAATCCTTCATAACCTCAAAGGCATCGCTCCTGACACTGGGGTTGATGTTTCAACCATGAATGTTCTTTGCTGGAGTCCCGATGGTGAGACCTTAGCTGTTCCTGGGTTGCGAAATGATGTGGTGATGTATGATAGGGACACGGCTGAGAAGTTGTTTTCTTTGAGAGGGGATCACATACAACCTATATGTTTCTTGTGTTGGTCACCCAATGGGAAATACATGGCTACTTCTGGTTTAGACAAGCAGGTTCTGATTTGGGATGTTGATAGGAAGCAGGACATTGATAGACAGAAGTTTGATGAAAGAGTGAGTAGCATGGCGTGGAAGCCAACTGGGAATGCCTTAGCTGTTGTTGATGTTATGGGAAAGTATGGTATCTGGGAGAATGTTATTCCTTCATCTATGAAGTCTCCAACTGAGGATATACCTATGCAATACAAGAATAGTAAAGGGGTTCTTTTGTTTGACGAGGAGGATCCGGAAAATAGTGCAAGTGGAAGCTTGAGTGATGTTGGTGAAAATAGTAATGGTGTGTCCGAGCCACCACCTAGCAGGAAAAGATTGCGTAAGCCGTCTTTGAGCGAGGAAAATTTAGATGATGATGGAGGTGATGAAATTGCTTTGTTTCCCAAGGTTGAATCCCACAAGAAACGGAATCACTTGCATAAGGAAAATTTGGATAATGGGAATGTGTTGGGATTTAGAAGCACGATGGTAACTTCTAGGCCAAAGATGCAGGAGGCATTTCAACCAGGATCTACTCCTGTGCAGTCTGGAAAAAGGCGCTTCTTATGCTACAATATGCTTGGAAGTATAACCACTGTTGAACATGATGGATTCTCTCATATTGAGATTGATTTTCATGATACTGGAAGCAGTCCTCGAGTTCCATCTATGACTGATCATTTTGGATTTACAATGGCCTCATTAAATGAGGATGGGAGCGTCTTTGCAAATCCTTGCAAGGGGGAGAAGAACATGAGCACCCTCATGTATCGCCCATTTAGTAGCTGGGCTAATAATACCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCACTTGGAGCTGCTTGGGTGGCTGCGGCAACTAGTTTTAACTATCTTCGGATCTTTACTGAGGGTGGTTTGCAGGTTTGTCGCACATTTTTATTGCAGAAACATGTTATTTCGCTAGATGGGCCAGTTGTGACTGCATCGGGTTTCAACGACAAGCTTGCGGTTGTGACTCATGCTTCTGATTGCCTTTCCTCAAATGATCAGGTGCTAGAGTTTAAAATATTTAATATACCTCATGGGACCCAACCACTTCGAGGTCGCTTGCCATTAAGTCCTGGGTCATCTCTAAGTTGGTTTGGGTTTAGTGAAGAAGGCCAATTGTGTTCGTACGATTCCAAGGGGGTGCTAAGATCATATACAAGCCAATTCGGTGGTAGCTGGCTCCCACTCTTCAGTGCTATTAAAGAGAAGAAGTCAGATGAAAACTATTGGGTGGCTGGGTTGAATTCAAGCAAGTTATTTTGTGTGATATGCAAAAAGCCTGACGCCTTCCCACAGGTGATGCCTAAACCAGTTCTCACTCTATTGAATCTTTCATTTCCTCTCGCTTCCTCTGATTTGGGATCTGAAGCCCTTGAAAATGAGTTTATAATGAACAGCATGCGTCTCTTTGAGATTCAGAAAAAAATGGAAGAAATGGCTATTGCTGGTTTAGACACTAGTTCGCTTGATGATGATGCTTTCGATTTGGAAGCAGCACAAGATAGATGTATTCTTAGGCTTATAGCATCCTGCTGCAACAGTGATAAGCTTGTGCGAGCTACTGAACTTGTGAAGCTTTTGTCACTGGACAAATCAATGAAAGGTGCAATAAAACTTGTTACTTCTTTGAAGCTTCCAAACTTGGCGGAAAGGTTCAGCAGCATATTGGAGGAAAGGCTACTTCAAGAAGTGAAAAAAACTACGGAAACCAACCTCAAAGAAAACTGTCTTGCACCCATTCCAGCTGATGCTTCAACATCAAAAGCAGTTGCTATGTCATCACCAAAATTATCTGCTCCGTTGTTCATAAAGAAAGACAGAACACAAGAGGGAGCTAAAGCTGGAGTAAATAAAACTGTAACGGTGAATGAAACTCCAAAGGCAAAGCAGAGAGTGGATGAAACAAGTGACAAGGGGGGGAAGCTGGGTGATATGCTTCAGGTGCAAGCTCCTCACACACATGATCCCTCTATAAAGTCGTCATTTAAGCAGGGAGCTAACAAGACAGAGGCTAGTTTTGCACATTCAAATAGGCCGTCCAATCCATTTTTGAAGTCTTCTATCAAGTGA 2877 0.446 MKVRSVKLRDAHAHKGGRPSFCSVVWDQQAKHLVTASSSDVSISIHDPLLPSATPRILRHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFETNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTVDGSIARVLKGHKGSVTGLAFDPNGEYLASLDSTGTVIFWELHSGRILHNLKGIAPDTGVDVSTMNVLCWSPDGETLAVPGLRNDVVMYDRDTAEKLFSLRGDHIQPICFLCWSPNGKYMATSGLDKQVLIWDVDRKQDIDRQKFDERVSSMAWKPTGNALAVVDVMGKYGIWENVIPSSMKSPTEDIPMQYKNSKGVLLFDEEDPENSASGSLSDVGENSNGVSEPPPSRKRLRKPSLSEENLDDDGGDEIALFPKVESHKKRNHLHKENLDNGNVLGFRSTMVTSRPKMQEAFQPGSTPVQSGKRRFLCYNMLGSITTVEHDGFSHIEIDFHDTGSSPRVPSMTDHFGFTMASLNEDGSVFANPCKGEKNMSTLMYRPFSSWANNTEWSMRFEGEEVKVVALGAAWVAAATSFNYLRIFTEGGLQVCRTFLLQKHVISLDGPVVTASGFNDKLAVVTHASDCLSSNDQVLEFKIFNIPHGTQPLRGRLPLSPGSSLSWFGFSEEGQLCSYDSKGVLRSYTSQFGGSWLPLFSAIKEKKSDENYWVAGLNSSKLFCVICKKPDAFPQVMPKPVLTLLNLSFPLASSDLGSEALENEFIMNSMRLFEIQKKMEEMAIAGLDTSSLDDDAFDLEAAQDRCILRLIASCCNSDKLVRATELVKLLSLDKSMKGAIKLVTSLKLPNLAERFSSILEERLLQEVKKTTETNLKENCLAPIPADASTSKAVAMSSPKLSAPLFIKKDRTQEGAKAGVNKTVTVNETPKAKQRVDETSDKGGKLGDMLQVQAPHTHDPSIKSSFKQGANKTEASFAHSNRPSNPFLKSSIK 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4120g00038 958 MobiDBLite consensus disorder prediction 922 958 - -
Gabi4120g00038 958 MobiDBLite consensus disorder prediction 893 958 - -
Gabi4120g00038 958 SMART WD40_4 177 223 IPR001680 GO:0005515
Gabi4120g00038 958 SMART WD40_4 4 47 IPR001680 GO:0005515
Gabi4120g00038 958 SMART WD40_4 135 174 IPR001680 GO:0005515
Gabi4120g00038 958 SMART WD40_4 269 307 IPR001680 GO:0005515
Gabi4120g00038 958 SMART WD40_4 93 132 IPR001680 GO:0005515
Gabi4120g00038 958 SMART WD40_4 51 90 IPR001680 GO:0005515
Gabi4120g00038 958 SMART WD40_4 226 266 IPR001680 GO:0005515
Gabi4120g00038 958 FunFam Transducin family protein / WD-40 repeat family protein 195 322 - -
Gabi4120g00038 958 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Gabi4120g00038 958 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Gabi4120g00038 958 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 955 - -
Gabi4120g00038 958 MobiDBLite consensus disorder prediction 337 384 - -
Gabi4120g00038 958 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Gabi4120g00038 958 Gene3D - 2 195 IPR015943 GO:0005515
Gabi4120g00038 958 Pfam Minichromosome loss protein, Mcl1, middle region 427 717 IPR022100 -
Gabi4120g00038 958 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Gabi4120g00038 958 MobiDBLite consensus disorder prediction 341 360 - -
Gabi4120g00038 958 SUPERFAMILY WD40 repeat-like 21 307 IPR036322 GO:0005515
Gabi4120g00038 958 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Gabi4120g00038 958 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Gabi4120g00038 958 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Gabi4120g00038 958 Pfam WD domain, G-beta repeat 140 173 IPR001680 GO:0005515
Gabi4120g00038 958 CDD WD40 22 296 - -
Gabi4120g00038 958 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Gabi4120g00038 958 MobiDBLite consensus disorder prediction 362 376 - -
Gabi4120g00038 958 Gene3D - 196 323 IPR015943 GO:0005515
Gabi4120g00038 958 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4120g00038 59 296 U-box Gene Family AT2G33340 21.992 9.09e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4120g00038 K11274 - gmx:100809300 1478