Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4120g00027 ATGATGTGCGACAAGAATAGTCCTCCTCCAACTGCAAAAACAAACTCTATTATGAAGAAGAAGAATAAGAAGACACAAAAAAGGACTAAAGAGTCTTCTTCTTCAACTTCTTCTTCTTCCACATCATCTTCTCTTAAACCACATCGACGCAGAAACAGAACAAAAACGAGAAAACCCAAGTTCCTTAGTCTTCGTCTTCAACTATCTCAAAACGAGAACAAACCCAAGAAAATGACTCATCAACAACACCAACAACCCAAAACAGAGCAACAACAACAACCACAGTTGAACCTCTTCCCTCTTCACCCTGAAAACATGGTTGAGGACAAGGACATGCACGAAGAGAACAACGTGGCTTTGCTCTTCAGCTCCGACGGCGGCGCCACCCTCAACGGCTTGCTCGAAGATGAATCAACCACCACAACCACGGCCACCACGACGTCGGAGGAGGGATCCTTCTCGCCGCTGACGTGTCCGTCGTTGAACGGCGGCGACAATGGAAGCTGGCTGGTGAGGAAGGCGATGAGGAGGAGGAGCATAGAGAGGGATAATGAGGGGAGTGAAGAGAGGTGGGTGTGTTACTCGGAGGTGGTGGAGAAAAAGGAGCTCATGGAGGAAGTGACCAGTTATTGCGGCGGCGCCACCATGGTGACCGCCACGGAGGACCCGTTGTTTTGTGTTGGTGGTGGGAAAGGGATGACGACGTCGTTTGGGTTATTGTCATTGAAGCTGGATCACGAGGAGATATTGAATGCTTGGTCGGACAAAGGTTCTCTTTACGTCGCAGAGGAGGAGGCCCCACAAACTGTCCCTGATTTGCTCAATGGTGTCCTTCTTCCCAATGTTGCATGGGACAGTTGGGGGAGTGACGTTGTTGGGAACACATGGAAAGTTCCTGAAGATTGTGGAGCTAACAAGATGGAAATGAAGGAACAAATGGGTTGGAAACTGGGGCAGAGAGAAGCAAGTGTTCTAAGATATAAGGAGAAGAGGCAAAACAGGCTTTTCTCTAAGAGGATCCGTTATGAAGTTCGCAAACTGAATGCTGAGAAACGGCCCAGGATGAAGGGACGATTTGTGAAGAGGGAATGA 1092 0.4863 MMCDKNSPPPTAKTNSIMKKKNKKTQKRTKESSSSTSSSSTSSSLKPHRRRNRTKTRKPKFLSLRLQLSQNENKPKKMTHQQHQQPKTEQQQQPQLNLFPLHPENMVEDKDMHEENNVALLFSSDGGATLNGLLEDESTTTTTATTTSEEGSFSPLTCPSLNGGDNGSWLVRKAMRRRSIERDNEGSEERWVCYSEVVEKKELMEEVTSYCGGATMVTATEDPLFCVGGGKGMTTSFGLLSLKLDHEEILNAWSDKGSLYVAEEEAPQTVPDLLNGVLLPNVAWDSWGSDVVGNTWKVPEDCGANKMEMKEQMGWKLGQREASVLRYKEKRQNRLFSKRIRYEVRKLNAEKRPRMKGRFVKRE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4120g00027 363 MobiDBLite consensus disorder prediction 1 95 - -
Gabi4120g00027 363 ProSiteProfiles CCT domain profile. 320 362 IPR010402 GO:0005515
Gabi4120g00027 363 MobiDBLite consensus disorder prediction 31 45 - -
Gabi4120g00027 363 Pfam CCT motif 320 362 IPR010402 GO:0005515
Gabi4120g00027 363 MobiDBLite consensus disorder prediction 138 159 - -
Gabi4120g00027 363 MobiDBLite consensus disorder prediction 46 60 - -
Gabi4120g00027 363 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 12 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4120g00027 Gabi-Chr4120 479976 484727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4120g00027 240 362 C2C2-CO-like Transcription Factor Family AT1G73870 44.800 2.30e-21 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi4120g00027 CCT 2.5e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4120g00027 - - gmx:100798231 390.578