Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4120g00001 ATGGCTTCAAGACCCATTGTTCCAAAACAAGCCAGAGATATTGCTATGGTTGGCGGAGGAAAGCAACAGAAGAAGAACGATGCAACAGAGGAAAGGAACCGCAAAGCACTTGGCGATATTGGAAATTTAGTCACCTTAAGAGGATTTGAGGACAAACCCAATCGTCCCATTACAAGGAGTTTCTGTGCCCAACTACTTGCTGAAAATAACAAGGCAGCATGTGGTCTAACTAAAAAACCGAAGGTTGAGATTGTTGATATTGATGCTGGTGATGCTGGGAATGAGCTTGCTGCTGTGGAATATGTTGAAGATATTTACATGTTCTATAAGGAAGTGGAGAACGAGAGCCTTACCCAGGACTACATGAACACACAACACCAACCTGAGATAAATAAGAGAATGAGAGAAATACTGATTGATTGGTTGATGGATGTCCACTCAAAGTTTGAACTTTCACTTGAAACCCTTTATCTTACCATTAATATAATTGATCGGTTTCTATCAATTAAGACAGTGCCAAGAAGGGAACTGGAATTGGTTGGTGTTGGTGCCATGCTGATGGCATCCAAGTATGAAGAAATATGGCCCCCTCAGGTTAATGACTTTGTCTGCCTTTCAGACACAGCTTACACTCATGAACAGATTCTGGGGATGGAGAAAATCATACTTGGCAATCTGGAATGGACTTTGACTGTGCCTACACCATTTGTTTTCCTAGTTCGCTTTATCAAGGCATCAGTTCCTGATCAGATGTTGGAAAACATGGCCCATTTTCTTTGTGAGCTGGGAGTGATGCATTATGCCACCTTAGTTAAGTATTGCCCATCAATGGTTGCTGCCTCAGCAGTCTTTGCAGCTAGATGCACTCTTGATAAGAGCCCCGTTTGGAATGAGACACTTAAGCTACACACGGGTTACTCAGATGAACAACTAATGGAATGTGCTAGACTACTGGTCAACTTCCACTCCACGGTTGGAAATGGAAAGCATATGACTGTGTACAGAAAGTACTCTCATCCTCTGAGAGGGGCTGTTGCAGGGCTTCCATCAGCTAAGAATCTTCTAACCGAAGGTTCTACATCAATTTGCCCGGAACATTCTTAG 1104 0.4284 MASRPIVPKQARDIAMVGGGKQQKKNDATEERNRKALGDIGNLVTLRGFEDKPNRPITRSFCAQLLAENNKAACGLTKKPKVEIVDIDAGDAGNELAAVEYVEDIYMFYKEVENESLTQDYMNTQHQPEINKRMREILIDWLMDVHSKFELSLETLYLTINIIDRFLSIKTVPRRELELVGVGAMLMASKYEEIWPPQVNDFVCLSDTAYTHEQILGMEKIILGNLEWTLTVPTPFVFLVRFIKASVPDQMLENMAHFLCELGVMHYATLVKYCPSMVAASAVFAARCTLDKSPVWNETLKLHTGYSDEQLMECARLLVNFHSTVGNGKHMTVYRKYSHPLRGAVAGLPSAKNLLTEGSTSICPEHS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4120g00001 367 CDD CYCLIN_AtCycB-like_rpt2 233 349 - -
Gabi4120g00001 367 SUPERFAMILY Cyclin-like 94 230 IPR036915 -
Gabi4120g00001 367 SUPERFAMILY Cyclin-like 232 352 IPR036915 -
Gabi4120g00001 367 SMART Cyclin_C_2 233 351 IPR004367 -
Gabi4120g00001 367 Gene3D - 118 231 - -
Gabi4120g00001 367 PIRSF Cyclin_A_B_D_E 64 362 IPR046965 GO:0016538|GO:0044772
Gabi4120g00001 367 PIRSF Cyclin_A_B_D_E 1 73 IPR046965 GO:0016538|GO:0044772
Gabi4120g00001 367 Gene3D - 104 346 - -
Gabi4120g00001 367 SMART cyclin_7 237 320 IPR013763 -
Gabi4120g00001 367 SMART cyclin_7 140 224 IPR013763 -
Gabi4120g00001 367 CDD CYCLIN_AtCycB-like_rpt1 84 228 - -
Gabi4120g00001 367 ProSitePatterns Cyclins signature. 135 166 IPR006671 -
Gabi4120g00001 367 Pfam Cyclin, N-terminal domain 104 230 IPR006671 -
Gabi4120g00001 367 PANTHER CYCLINS 64 343 IPR039361 -
Gabi4120g00001 367 Pfam Cyclin, C-terminal domain 233 349 IPR004367 -
Gabi4120g00001 367 FunFam G2/mitotic-specific cyclin-1 220 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4120g00001 Gabi-Chr4120 8761 10900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4120g00001 65 356 Core Cell Cycle Gene Families AT4G37490 58.609 1.96e-123 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4120g00001 K21777 - gmx:547919 461.455