Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi411g00001 ATGCCTCCGAGGAAGAAACCCAACTCTTCTGCTTCATCTTCTTCTTCGTCTAAGAAGCCGAATCTTCAACCTTCCAAGTTCGGCATCCAACACTTCTTCGATCGACACACCCTCCTCACCTCTCAGAAGCTCCAAGCCAACAATGCAAATCCCAATACACCCGTTGTCGGGGTTCCCACCTCCGAGGTTGTTTCCGGTACCTCCAAGGTTGTTTCTAATACCTCCGAGGTTGTTTCCGGTACCTCCGTTCCTCTCCGACGCGGAAAACCTAACGACGAAGAGGGTCCAAATTCGCAGAATACTCCGCCCGAGAATTCGGTGTCTTGGAGGACTAATGCGGCAGAGACTCTCTCCGAGGTGTCTCCAGAGATGTCCAAGTCTCTCTCGCTTAAGCGCTTCAAATTCTCACCTGGGATGTTTGTCAAGCAGAGCCAGGATGATGGGGTTGATGAGGTTACATGGAAGATATCCCCGATGAATGAAAGGCTCCAATCAGTTTCAAAACACATGCCTAATATAATCAAAGCTTTGGCTGACTCTTCCAGAATCAACTTTTTGCCAATTCGCAGCTGCTCAGAAGATAAGGCAAATGGCAAAGTTGAAAAGTTTCTTACTTCACCAACTCCTAAGGCTTCTGCAAAATCTCTGGTGTCAACGAGTAAGTTAGGCTTGAAAAGAATAAACCCAGGCCAAGATGCTGATTTTAACGTCAATGCAACTATTGTGAGTAACTCTGGAGTAGCTGGTGGACAGAGTCCCTTCAGAACTCCACCATCTTTGTCTTATAGCCATGATAAGCTTGCCAAAGATATTGAACATGGTGGACCAGCTGATCAGCTTTACTTAAGACAGCACAAAAAGGCATTGCTTGAACTGTTAGATCAAGTTGAAGATGCCATTTCTGTTGACAATGCTACAGTTTATAATAAAAGTACTTATTCCTCTAAATCTCAAAATGGAATTGCTGATAAGCTCCCTGTCCGAGCCAACCATGCGGGAGAAGTTGTTAGTGTTTTCTCCAATACTAATTATTTGGTTTTGGAGGTGTCTGATAAACGTAGGCCTGCTGAATCATCTGCTGCTCAATGCCCATACAAGGTGCTACGTTTACTAAATGAACAAACTGGAGAAGAGCGGGCTGTAAACTTGTGGGATGAGTGGTCTTACAGTGTAATTGCACCTGGAGATACTGTGAACATAATCGGTCAATTTGACGAAGGGGGAAATTATGATATTAATCATGATAATAATTTTTTGATTATACACCCAGATATTCTGGTGTCTGGAACACGGGTTGCTGCCAGTTTTAGTTGCCCAAGGAGAACAGTCTTAGATGAGAGGCTAAAATACAATGAGTACTCAATTCCAGCATTAACTGGAACCTTGCTTCACCAAATTTTCCAGGCTGGGCTTACAAAAGATGATCCTACAGTAAACTTCTTGGAAGATTACACAGAAGTGGTAGTACAGAGAAACATTGAAAGTTTGTATGCATGTGGAGTAAATGAAAATGATGTTCACAAAACCTTGATTGATGCTATCCCAAGAATATTGAGTTGGATCATGCTGTTCAAAAATTCGGAGGAAAGAAAAGACCCTAATGTTGGATTTGATGATGGGCGGAAGAAAGTTAGCATATCTGAGGTAATTGATATTGAAGAGATGGCATGGGCTCCAAAATATGGTTTGAAAGGGATGATTGATGCTTCGGTGAGAGTGAAAGTTCAATCAAGAAAAGATGAACCGGAGGAAAAGATCATGCCGATAGAGTTCAAAACTGGAAAAACACCAAATAGCCAGTCATCAGTAGAACATAGCGCCCAAGTGATTTTGTACACTCTCCTGATGTCTGAAAGGTACCAGAAGGCTATTGATTCTGGTCTTCTATATTATCTCCAATCAGATCAGACACAGGGCATTATGGTTCAAAGATCTGACTTAGTTGGCTTAATAATGCGACGTAATGAGCTAGCAAGTGATATTCTTAAGGCATTAACCTTACAACAATTACCACCAATGTTACAGAGTCCTAGCATTTGCAGAGGTTGTCGCCATCTGAATGTTTGTAGCATTTATCATAAGGCAGATGGTGGAAGCACAAAGAGCAGTGGATTGGGAGATATGTTTGATTCTCATACTAATCACCTGACATCTTCTCATTCTAAGTTTCTCTGCCATTGGGATCATCTGATTGACTTAGAAGCTAAAGAGACTGAGCTTTTAAAGAAAGGGGTGTGGCGATCACATAGTTTAAAGGGTCTAAACAGTGGCGGCGTTTCTTCTGTTGTTCTTGATGCTTCACAAGGAATTCCTTATCAGAAATCTCTCAAAGATAATCGTTTCATTTATCGTTTTGTACAACAAGATACTTCTTGCCTCTCTGAAGTTTCTGATGGTGATCCTTCTAGTACTTCTTTGAAAAACAATTTAGATCTCACACTTCGAAGTGGAGACTATGTGATACTGAGCAATGAATCTAGCCATCAAACTATTGCAAAAGGGGTGATCTCAGATGTTTGTCAGACCCATGTATCTGTTTCCTTCTCTAAGCGCTTACGAATTCCTGGGAGGTCTTCCACTACACATGATCTCCTTCAACAGGTTTGGAGAATTGACAAGGATGAAGTTGTGACTTCATTTGCAATTATGAGGTTTAATCTTGTCCAACTTTTTCTACAAAATGATCAAACTGCTCATCTGCGGAGGATGATTGTTGACCTTGAGGCTCCTAGATTTGACAGTGGATCTATAGCTAGCCAGGATCCGGCAATATCCTATGTATGGTCAGAGAAGAGTTTGAATGATGATCAACGTAGAGCAATTCTCAAGATACTTACGGCAAAAGATTATGCGCTTATATTGGGGATGCCCGGAACAGGGAAGACATCCACCATGGTTCATGCTGTGAAAGCCTTGTTGATTAGAGGCACATCCATTTTGCTGACAGCCTATACAAACTCTGCTGTTGATAATTTACTCATCAAACTAAAAGCACAGGGCATTGATTTTTTACGTATTGGAAGACATGAAGCAGTGAATGAGGAGGTCAGAGGACACTGCCTCTCAGCAACAAATGTACGGAGCGTTGAAGATATCAAAAGAAGGTTAGAGCAAGTCAAAGTTGTTGCATTTACTTGTCTGGGCATTTCCAGTCCCTTGCTTGCCAACATGAGATTTGATGTATGCATTATGGATGAAGCTGGACAGACAACTCTACCAGTGTCCTTGGGCCCTCTAACATTTGCTTCGATGTTTGTACTTGTTGGGGATCATTATCAACTCCCCCCAATTGTCCAGAGTACAGAGGCCCGAGAAAATGGCATGGGGATAAGTTTGTTTTGTAGGCTCTCAGAAGCACATCCTCAGGCAATTTCAGCTTTACAGAGTCAATACCGCATGTGTCAGGGGATTATGGATTTGTCAAATGCCTTGATATATGGTGACAGATTGAGGTGTGGTTCATCTGAGGTAGCTAATGCAAAACTAGAGTTTTCTGGATTAAACTGTGGTTTGTCTTGGCTAGAAGATGTTTTGAATCCAGGAAGGCCAGTGATATTTATTGATACTGACCAGTTGCCCGCTTTAGAGGCAAGAGATCAGAAGAATGTAAATAACCCCGTTGAAGCTCACATAATTGCCGAGGTTGCTAAGGAATTGGTTGCAAATGGAATTGGAGGAGAACATATTGGCATTATCACTCCCTATAATTCACAGGCAAACCTCATCCGGCATGCTGCTTGCATAACTTCCTTGGAGATACACACCATTGACAAATACCAGGGTAGAGACAAGGACTGTATATTAGTGTCTTTTGTAAGATCTAGTGAAAACCCAACAAGTTGTGTTGCTTCTTTGCTCGGAGACTGGCGCAGGATTAATGTGGCTCTTACTCGTGCCAAGAGAAAGTTGATCATGGTGGGGTCTCGTAGAACTCTATTAAAGGTTCCGCTACTGAAGCTTCTCATTAAGAAGGTTGAGGAGCAATCTGGAATTTTAAGTCCGTCTAAGAAGGATATCTATCGAAAAGGTGAGCTGAAGAGATGTTCCCAAATGAGATGA 4059 0.4208 MPPRKKPNSSASSSSSSKKPNLQPSKFGIQHFFDRHTLLTSQKLQANNANPNTPVVGVPTSEVVSGTSKVVSNTSEVVSGTSVPLRRGKPNDEEGPNSQNTPPENSVSWRTNAAETLSEVSPEMSKSLSLKRFKFSPGMFVKQSQDDGVDEVTWKISPMNERLQSVSKHMPNIIKALADSSRINFLPIRSCSEDKANGKVEKFLTSPTPKASAKSLVSTSKLGLKRINPGQDADFNVNATIVSNSGVAGGQSPFRTPPSLSYSHDKLAKDIEHGGPADQLYLRQHKKALLELLDQVEDAISVDNATVYNKSTYSSKSQNGIADKLPVRANHAGEVVSVFSNTNYLVLEVSDKRRPAESSAAQCPYKVLRLLNEQTGEERAVNLWDEWSYSVIAPGDTVNIIGQFDEGGNYDINHDNNFLIIHPDILVSGTRVAASFSCPRRTVLDERLKYNEYSIPALTGTLLHQIFQAGLTKDDPTVNFLEDYTEVVVQRNIESLYACGVNENDVHKTLIDAIPRILSWIMLFKNSEERKDPNVGFDDGRKKVSISEVIDIEEMAWAPKYGLKGMIDASVRVKVQSRKDEPEEKIMPIEFKTGKTPNSQSSVEHSAQVILYTLLMSERYQKAIDSGLLYYLQSDQTQGIMVQRSDLVGLIMRRNELASDILKALTLQQLPPMLQSPSICRGCRHLNVCSIYHKADGGSTKSSGLGDMFDSHTNHLTSSHSKFLCHWDHLIDLEAKETELLKKGVWRSHSLKGLNSGGVSSVVLDASQGIPYQKSLKDNRFIYRFVQQDTSCLSEVSDGDPSSTSLKNNLDLTLRSGDYVILSNESSHQTIAKGVISDVCQTHVSVSFSKRLRIPGRSSTTHDLLQQVWRIDKDEVVTSFAIMRFNLVQLFLQNDQTAHLRRMIVDLEAPRFDSGSIASQDPAISYVWSEKSLNDDQRRAILKILTAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFLRIGRHEAVNEEVRGHCLSATNVRSVEDIKRRLEQVKVVAFTCLGISSPLLANMRFDVCIMDEAGQTTLPVSLGPLTFASMFVLVGDHYQLPPIVQSTEARENGMGISLFCRLSEAHPQAISALQSQYRMCQGIMDLSNALIYGDRLRCGSSEVANAKLEFSGLNCGLSWLEDVLNPGRPVIFIDTDQLPALEARDQKNVNNPVEAHIIAEVAKELVANGIGGEHIGIITPYNSQANLIRHAACITSLEIHTIDKYQGRDKDCILVSFVRSSENPTSCVASLLGDWRRINVALTRAKRKLIMVGSRRTLLKVPLLKLLIKKVEEQSGILSPSKKDIYRKGELKRCSQMR 1352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi411g00001 1352 FunFam DNA replication helicase Dna2 536 690 - -
Gabi411g00001 1352 Gene3D - 1028 1130 IPR027417 -
Gabi411g00001 1352 Gene3D - 875 1024 IPR027417 -
Gabi411g00001 1352 Gene3D - 428 690 IPR011604 -
Gabi411g00001 1352 Pfam AAA domain 1110 1309 IPR041679 -
Gabi411g00001 1352 CDD SF1_C_Upf1 1133 1311 IPR047187 -
Gabi411g00001 1352 PANTHER DNA2/NAM7 HELICASE FAMILY 152 1325 IPR045055 -
Gabi411g00001 1352 CDD DNA2_N-like 428 661 - -
Gabi411g00001 1352 MobiDBLite consensus disorder prediction 7 24 - -
Gabi411g00001 1352 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 875 1024 - -
Gabi411g00001 1352 Gene3D - 811 874 - -
Gabi411g00001 1352 MobiDBLite consensus disorder prediction 94 108 - -
Gabi411g00001 1352 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 1029 1130 - -
Gabi411g00001 1352 Pfam Domain of unknown function DUF83 582 690 IPR022765 -
Gabi411g00001 1352 CDD DEXXQc_DNA2 932 1132 IPR026851 GO:0017116
Gabi411g00001 1352 FunFam DNA replication helicase 1131 1344 - -
Gabi411g00001 1352 MobiDBLite consensus disorder prediction 67 108 - -
Gabi411g00001 1352 Pfam DNA replication factor Dna2 373 573 IPR014808 -
Gabi411g00001 1352 MobiDBLite consensus disorder prediction 67 81 - -
Gabi411g00001 1352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 932 1318 IPR027417 -
Gabi411g00001 1352 Pfam AAA domain 933 1023 IPR041677 GO:0004386
Gabi411g00001 1352 Pfam AAA domain 1033 1100 IPR041677 GO:0004386
Gabi411g00001 1352 MobiDBLite consensus disorder prediction 1 30 - -
Gabi411g00001 1352 Gene3D - 1131 1342 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi411g00001 Gabi-Chr411 27677 89420 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi411g00001 1 1074 Core DNA Replication Machinery Family AT1G08840 55.850 0.0 1152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi411g00001 K10742 - gmx:100799415 1857.03