Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4118g00003 ATGGCTTCTTTCTTAGTACCTTTTATGGGTTTGAATGCTCACCGAGAGGGGGTTCTTATGGACGACGTTTGGGTTCTTGATTCATCGGGCTTCACTTACACCAACAACATGCAAAGAAATATCAGAGATCGTGTGGCATTGGATTACAACCACAACATGCAGAACAATGAAACAGAAAGAGGCTATGTCTTTGATTCAGTCGACTTGCATAGTGGTGTTTCAAGTGAGGAGTCCACGACACAAGATTATTTTCAAAATCTTGAAGAGGACACGATTGAAGCAGAGTCTTCTTCCATCACAGATTGTTCTATTTGTCTCGTGGAGATTGGGTCAAGAGAAACAATTGGCTTGCCTTGCTCACACATGTTTCATCGGGATTGCATCGCTAAGTGGCTCAAGATTCGCGATACATGTCCTTTATGTAGATGCAATGTCAACGAATGA 444 0.4234 MASFLVPFMGLNAHREGVLMDDVWVLDSSGFTYTNNMQRNIRDRVALDYNHNMQNNETERGYVFDSVDLHSGVSSEESTTQDYFQNLEEDTIEAESSSITDCSICLVEIGSRETIGLPCSHMFHRDCIAKWLKIRDTCPLCRCNVNE 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4118g00003 147 SMART ringv_2 101 142 IPR011016 GO:0008270
Gabi4118g00003 147 SUPERFAMILY RING/U-box 101 145 - -
Gabi4118g00003 147 Pfam Ring finger domain 101 142 IPR001841 -
Gabi4118g00003 147 ProSiteProfiles Zinc finger RING-type profile. 102 142 IPR001841 -
Gabi4118g00003 147 PANTHER SI:CH211-59O9.10 49 146 - -
Gabi4118g00003 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 146 IPR013083 -
Gabi4118g00003 147 SMART ring_2 102 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4118g00003 Gabi-Chr4118 72239 72682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4118g00003 60 145 C3H Transcription Factor Family AT3G47990 34.444 2.67e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4118g00003 - K16284 lang:109353994 70.0922