Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4118g00002 ATGGCTTCTTTCTTAGTACCTTTTATGGGTTTGAATGCTCACCGAGAGGGGGTTCTTATGGACGACGTTTGGGTTCTTGATTCATCGGGCTTCACTTACACCAACAACATGCAAAGAAATATCAGAGATCGTGTGGCATTGGATTACAACCACAACATGCAGAACAATGAAACAGAAAGAGGCTATGTCTTTGATTCAGTCGACTTGCATAGTGGTGTTTCAAGTGAGGAGTCCACGACACAAGATTATTTTCAAAATCTTGAAGAGGACACGATTGAAGCAGAGTCTTCTTCCATCACAGATTGTTCTATTTGTCTCGTGGAGATTGGGTCAAGAGAAATAATTGGCTTGCCTTGCTCACACATGTTTCATCGGGATTGCATCGCTAAGTGGCTCAAGATTCGCGATACATGTCCTTTATGTAGATGCAATGTCAACGAATGA 444 0.4212 MASFLVPFMGLNAHREGVLMDDVWVLDSSGFTYTNNMQRNIRDRVALDYNHNMQNNETERGYVFDSVDLHSGVSSEESTTQDYFQNLEEDTIEAESSSITDCSICLVEIGSREIIGLPCSHMFHRDCIAKWLKIRDTCPLCRCNVNE 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4118g00002 147 PANTHER SI:CH211-59O9.10 49 146 - -
Gabi4118g00002 147 SMART ring_2 102 141 IPR001841 -
Gabi4118g00002 147 Pfam Ring finger domain 101 142 IPR001841 -
Gabi4118g00002 147 CDD RING-H2_PA-TM-RING 101 142 - -
Gabi4118g00002 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 146 IPR013083 -
Gabi4118g00002 147 SUPERFAMILY RING/U-box 101 145 - -
Gabi4118g00002 147 SMART ringv_2 101 142 IPR011016 GO:0008270
Gabi4118g00002 147 ProSiteProfiles Zinc finger RING-type profile. 102 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4118g00002 Gabi-Chr4118 34167 34610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4118g00002 60 145 C3H Transcription Factor Family AT3G47990 34.444 1.21e-12 62.0