Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4116g00012 ATGCCAACTGTGTGGTTCTCTTTGAAAAAGTCTCTACACTGCAAATCAGAGCCATCAGATGTTCATGACCCAAAATCAAGGAAGCACTTGAGCACAATCTTGACTAAAAGGGAAGGGACAGGTAGGTCAGGTTGTTCCAGGTCCATAGCAAATCTCAAAGATGTTATCCATGGAAGCAAGAGGCATCTAGAGAAGCCACCAAGTTGTAGTCCAAGATCCATAGGGAGCAGTGAGTTCCTCAACCCAATAACACATGAAGTGATTTTGAGTAACTCAAGGTGTGAGCTGAAAATCACTGGCTATGGAGGATTTCAAGAAGGGGTTGGCAGTGATGGTGGAGGTGGTAATAATGGTGGTGCTAATTCAACCTTTGTTGGCACTTTAAGGCCTGGGACTCCTGGCCCTGGAGGGCACCCTACAATGCACTACTTCAACCCTTCTTTTAGGACTTCATCCACTCCTCCAAGGAAATCTCCTTTCCTTCTATCAGATAAAGAAGGGTCTGGCCTGCATGGTGTTGGACTTCATTCAGGAAGTAGGTTGTTTCTTGAGACAGATTCTAATGGTTCTTCTACTGTGACTTGCCACAAATGTGGTGAGCAATTTAACAAATGGGATGCTGCTGAAGCTCATCATCTTTCCAAACATGCTGTTACTGAACTTGTGGAAGGTGATTCATCAAGAAAAATAGTGGAGATAATATGCAGGACGAGCTGGTTAAAGTCTGAAAACCAATGTGGTCGAATTGAGAGAGTTTTGAAAGTCCATAACATGCAAAAGACTTTGGCTCGGTTTGAAGAGTACAGAGAGATGGTGAAAATCAAAGCCAGCAAACTCCCCAAGAAGCATCCTCGATGTCTTGCTGATGGGAATGAGCTATTGAGGTTCTATGGAACCACTGTTGCTTGTTCTCTTGGTCACAATGGCTCTTCTAGTCTTTGCCTATCTGAAAAATGCTGTGTTTGTAGAATTATTAGAAATGGTTTTTCTGCCAAGAATGAGCTCAAGGGTGGAATAGGAGTTTTCACTACTTCCACAAGTGGAAGGGCTTTTGAATCTATTGAGGTTTTTGACCATGACCCATCACTAAGAAAAGCATTGATAGTGTGCAGAGTAATTGCTGGCAGGGTCCATAGACCTCTTGAGAACATTCAGGAAATGGCAGGTCAAACAGGGTTTGATTCATTGGCTGGGAAAGTTGGTCTTTATTCAAATATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTAATTTGTAAACCCTGA 1284 0.4291 MPTVWFSLKKSLHCKSEPSDVHDPKSRKHLSTILTKREGTGRSGCSRSIANLKDVIHGSKRHLEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGVGSDGGGGNNGGANSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLLSDKEGSGLHGVGLHSGSRLFLETDSNGSSTVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLPKKHPRCLADGNELLRFYGTTVACSLGHNGSSSLCLSEKCCVCRIIRNGFSAKNELKGGIGVFTTSTSGRAFESIEVFDHDPSLRKALIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4116g00012 427 FunFam C2H2-like zinc finger protein 217 426 - -
Gabi4116g00012 427 ProSitePatterns Zinc finger C2H2 type domain signature. 195 216 IPR013087 -
Gabi4116g00012 427 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 425 - -
Gabi4116g00012 427 SUPERFAMILY ADP-ribosylation 218 426 - -
Gabi4116g00012 427 Gene3D - 207 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4116g00012 Gabi-Chr4116 290288 291780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4116g00012 1 427 C2H2 Transcription Factor Family AT5G54630 69.978 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4116g00012 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4116g00012 - - gmx:100787790 764.222