Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4116g00008 ATGAAAGAGGAGTCAACAGGACTAATCATTGGGATTTCCATAGGTTTGGTAATTGGAGTTGTTTTGGCAATTTCTGCTTTGTTATGTCTAAGATACCATCGGAAGCGTTCACAGATAGGCAATAGCAGTTCCCGGAGGGCAGCTACTATACCTATCCGTGCAAATGGTGCTGATTCATGTACTATTCTATCAGACTCAACCTTAGGTCCAGAATCACCTGTGAGGTCTAGTCGTAATGGCATGTCCTTCTGGCTTGATGGGTTCAAGAAGAGTAACATGGTTTCTGCATCTGGAATACCAGAATATTCATACAAGGATTTGCAAAAGGCAACATATAACTTTACCACCCTCATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTCTACTGGCGAGACTGTTGCCGTTAAAGTTCTTGCAACAAATTCAAAGCAGGGGGAGAAAGAATTTCACACAGAGGTTATGTTGTTGGGAAGGTTACACCATAGAAACCTGGTCAACTTGGTTGGATATTGTGCTGAGAAGGGGCAACATATGCTTGTGTACGTCTACATGAGTAAAGGAAGCTTGGCTTCTCACTTGTATAGTGAAGAGAATGGGGCACTGGGCTGGGATTTGAGAGTTCATATAGCTTTAGACGTTGCAAGAGGTGTGGAGTATCTTCATGATGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTGCCAACATTCTCTTGGACCAGTCAATGCGAGCCAGGGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAACATGCAGCTATTCGGGGTACCTTTGGCTATCTTGATCCTGAGTATATATCTTCAGGGACATTCACTAAGAAAAGTGATGTATACAGTTTTGGAGTGTTACTCTTTGAACTTATAGCTGGCCGAAATCCTCAGCAGGGTCTTATGGAATATGTTGAGCTTGCAGCAATGAATACTGAGGGGAAAAATGGTTGGGAGGAGATTATTGATTCTCGGCTTGAGGGAAAATGTGATTTCCAAGAGCTGAATGAAGTGGCAGCCCTTGCCTACAAATGCATCAACCGTGCACCAAGGAAGCGCCCTTCCATGAGGGACATAGTACAAGTGTTGACACGGATCCTTAAATCAAGGCACCATAGGAATCATCATCATAAGAAGTCCCTTTCAGCCACAGCAGACGAAGTTTCCATTGATTTGGATCAACCAGAAACCAAGACTTCTGTTACTGACCACCGAAGAGAAGAATCTATAGATAGTGCGGCTGACATGTATGATGTGTAG 1293 0.4346 MKEESTGLIIGISIGLVIGVVLAISALLCLRYHRKRSQIGNSSSRRAATIPIRANGADSCTILSDSTLGPESPVRSSRNGMSFWLDGFKKSNMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGSLASHLYSEENGALGWDLRVHIALDVARGVEYLHDGAVPPVIHRDIKSANILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKNGWEEIIDSRLEGKCDFQELNEVAALAYKCINRAPRKRPSMRDIVQVLTRILKSRHHRNHHHKKSLSATADEVSIDLDQPETKTSVTDHRREESIDSAADMYDV 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4116g00008 430 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 86 187 - -
Gabi4116g00008 430 FunFam calcium/calmodulin-regulated receptor-like kinase 1 188 397 - -
Gabi4116g00008 430 ProSiteProfiles Protein kinase domain profile. 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4116g00008 430 PANTHER OS01G0750732 PROTEIN 4 398 - -
Gabi4116g00008 430 Gene3D Transferase(Phosphotransferase) domain 1 188 402 - -
Gabi4116g00008 430 MobiDBLite consensus disorder prediction 381 430 - -
Gabi4116g00008 430 CDD STKc_IRAK 118 377 - -
Gabi4116g00008 430 MobiDBLite consensus disorder prediction 402 424 - -
Gabi4116g00008 430 Gene3D Phosphorylase Kinase; domain 1 85 187 - -
Gabi4116g00008 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Gabi4116g00008 430 SUPERFAMILY Protein kinase-like (PK-like) 101 395 IPR011009 -
Gabi4116g00008 430 Pfam Protein tyrosine and serine/threonine kinase 114 374 IPR001245 GO:0004672|GO:0006468
Gabi4116g00008 430 SMART serkin_6 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4116g00008 Gabi-Chr4116 261923 266837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4116g00008 24 424 Glycoside Hydrolase AT3G07070 36.977 8.63e-74 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Gabi4116g00008 PK_Tyr_Ser-Thr 2.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4116g00008 - - gmx:100799586 768.844