Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4116g00006 ATGCCATCATCATATATGGACTCGCAGCAACTTTTCAGTTTCAGTGTGGCTAGTGCAGGATTACCTTACATGCCATCTTTTCCCACTATTCCATCCCTACCAAGCAGGCTTCTTGGTTCCGTGAAATTTGACACAGGAAACTCACCTAATTCACCCTTTTCCACTCATTTTGATTCTGATACACTTTCTGCATTGAGTGACAACCAGGAGCAACACAGCTCTGGAGAAATCCTCTCATGTGTAAGCCCCTCTCGTAACTCTTCACTGGAAACCAACCATTATATGCATAGATCAATCTCATCTGTGGACAGACTCAGAGACAGTTTGCAACTATATTCTCCTAGGAGCTCTCTTCCACAGAATGCAATTTATAACCAGAAAATCAGACACGCATTGCTGGAACTAGAAACTGCTCTGATGGCACCTGATGATAATGAAGTTACCACATCAAATACGTCATTGGCTGAGAGCAGCAGGCCAACGACATCTGGTCAGAGATATAGGTCCTGGAGCCATGAGCACCAGGAGTCACAATATATTCAAACTCAGCCATCATATGTTACCAGCTGTAGGCAATCGAGTGAAGTTGAACATGTAGAGAAACGGCAGAAGTTGATGGAGGAAGCATCTCTACAAGGGTTCCCATCAAGCAATTTGAAACAATTGCTGATTGCATGTGCCAAAGCCCTGTCTGAAAACAACATGAAAGATTTTGATCAATTGATAGAAAAGGCTAGAAGTGTTGTGTCTATCAATGGGGAGCCAATACAGCGGCTTGGTGCTTATATGGTAGAAGGGCTTGTTGCAAGGAAGGAATCTTCGGGGAATAGCATCTATCGTGCCCTTAGGTGCCGAGAGCCTGAAGGTGAAGAATTACTCTCTTACATGCAATTGCTGTTTGAAATCTGTCCTTACTTGAAATTCGGTTACATGGCTGCCAATGGAGCCATTGCTGAGGCATGCAGAAACGAGGATCACATACACATAATAGACTTTCAGATTGCTCAGGGAACTCAATGGATGACTCTTCTTCAAGCTCTTGCAGCAAGACCTGGCGGGGCTCCCCACGTGCGGATCACAGGGATTGATGACCCCGTTTCTAAATATGCTCGTGGCGATGGACTAGAGGTAGTTGGGAAAAGGTTGGAGTTGATGTCTAAGAAATTTGGCATCCCAGTTGAGTTTCATGGAGTGCCTGTTTTTGCTCCAGATGTGACAAGAGATATGCTTGATATCAGGACTGGAGAGGCTTTGGCTGTGAACTTTCCCTTGCAACTCCATCATACAGCTGATGAGAGTGTTGATGTGAGTAACCCAAGGGATGGACTTTTGAGATTGGTAAAGTCGCTTTCACCCAAGGTGACCACACTCGTGGAGCAGGAATCAAACACAAACACAACTCCTTTCTTTAACAGGTTTATAGAAACCTTAGATTACTATTTGGCAATCTTTGAGTCCATTGATGTCACCCTCCAAAGAAATAGCAAGGAGCGGATTAATGTGGAGCAACATTGTCTTGCCCGGGATATTGTGAATGTTATTGCTTGTGAAGGCAAGGAAAGGGTAGAGCGACATGAACTGTTTGGCAAGTGGAAGTCTAGGTTAACAATGGCTGGCTTTCGTCAATGTCCTTTGAGCTCTTATGTGAATTCTGTTATAAGAAGCCTTCTGAGGTGCTATTCAGAACATTATACACTAGTGGAGAAAGATGGGGCCATGTTGTTGGGGTGGAAGAACAGAAATTTGATATCAGCCTCAGCCTGGCATTGA 1770 0.4429 MPSSYMDSQQLFSFSVASAGLPYMPSFPTIPSLPSRLLGSVKFDTGNSPNSPFSTHFDSDTLSALSDNQEQHSSGEILSCVSPSRNSSLETNHYMHRSISSVDRLRDSLQLYSPRSSLPQNAIYNQKIRHALLELETALMAPDDNEVTTSNTSLAESSRPTTSGQRYRSWSHEHQESQYIQTQPSYVTSCRQSSEVEHVEKRQKLMEEASLQGFPSSNLKQLLIACAKALSENNMKDFDQLIEKARSVVSINGEPIQRLGAYMVEGLVARKESSGNSIYRALRCREPEGEELLSYMQLLFEICPYLKFGYMAANGAIAEACRNEDHIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGDGLEVVGKRLELMSKKFGIPVEFHGVPVFAPDVTRDMLDIRTGEALAVNFPLQLHHTADESVDVSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLQRNSKERINVEQHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFRQCPLSSYVNSVIRSLLRCYSEHYTLVEKDGAMLLGWKNRNLISASAWH 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4116g00006 589 ProSiteProfiles GRAS family profile. 210 589 IPR005202 -
Gabi4116g00006 589 Pfam GRAS domain family 219 588 IPR005202 -
Gabi4116g00006 589 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 178 585 IPR005202 -
Gabi4116g00006 589 MobiDBLite consensus disorder prediction 143 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4116g00006 Gabi-Chr4116 185341 188584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4116g00006 210 588 GRAS Transcription Factor Family AT1G50600 62.005 3.83e-175 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi4116g00006 GRAS 3.3e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4116g00006 - - gmx:100799073 979.163