Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4112g00001 ATGGGGAGAGGGAAAATTGAGATAAAGAAGATTGAGAATTTGAACAGTAGGCAGGTTACCTTCTCCAAGAGGCGTAATGGTTTGCTCAAGAAAGCAAAAGAATTGTCTGTTTTGTGTGATGCAGAGGTTGCTGTCATCATTTTCTCCAGCACCGGGAAGCTTTATGAATTTGCAAACACAAGCATGGAGCATACCCTTTTAAGGTACGGCAGAGGCATGGAATTGGATAATGCAGAGCAGCCTAGTAATGAGCCCCCAATAAATGTTATGCAGCCTGATACCAACCTTCTGAAGGATGAAATAACAAAGCTGCGTTCAGCATACTTAAGGATGCTGGGTAAGGAGCTTGATGGTTTGAGCCTTAACGAACTGCAACACCTAGAAAATCAACTGGCTGAAGGGATACTTGCTGTCAAAGACAAGAAGGAACAAGTACTTGTAGAGCAGCTTAAGAGGTCCAGGTTACAGGAGCAAAAGGCCATCATGGAAAATGAAGCTCTGCGCAAACAACTCGAGGAGATACAGAATAAAACAAAGGCACAGTTCCTTGAATTCAATTCTTTGGATAGGACAATTTCCATCAATGGTTCAAAACCCCTTCTCAATTGTTCTTCAGAGGACAACGACCTTTCAGATACTTCCTTGCAGTTAGGGTTGTCAACAGATTATGGTCGCGAGAGGAAAGCATTGAAGATGGAACCTTGCAATGACTCAGGAAGTCAAGTAGCTTCACAATGA 738 0.4282 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFANTSMEHTLLRYGRGMELDNAEQPSNEPPINVMQPDTNLLKDEITKLRSAYLRMLGKELDGLSLNELQHLENQLAEGILAVKDKKEQVLVEQLKRSRLQEQKAIMENEALRKQLEEIQNKTKAQFLEFNSLDRTISINGSKPLLNCSSEDNDLSDTSLQLGLSTDYGRERKALKMEPCNDSGSQVASQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4112g00001 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Gabi4112g00001 245 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Gabi4112g00001 245 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Gabi4112g00001 245 Coils Coil 152 184 - -
Gabi4112g00001 245 Coils Coil 124 144 - -
Gabi4112g00001 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi4112g00001 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi4112g00001 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi4112g00001 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi4112g00001 245 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4112g00001 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi4112g00001 245 Pfam K-box region 90 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4112g00001 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi4112g00001 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi4112g00001 245 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Gabi4112g00001 245 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4112g00001 Gabi-Chr4112 63598 68037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4112g00001 1 219 MADS-box Gene Family AT5G13790 48.673 3.29e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi4112g00001 K-box 4.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4112g00001 - - gmx:100792278 403.675