Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4110g00004 ATGAAGCTTTTTTCTCTCATGTTACCTGCATTTTGCTCTACATACCTTCACCTATTTCTTCTCTTTACACTGAACTCATTGTGTTTTGGCCCAAACACAACTGCCTCTACATTGGGAAACCAAACTGACCATTTGGCATTGCTCAAATTCAAGGAATCAATATCCAATGACCCATATGGAATCTTGTTCTCTTGGAATAGTTCTACCCACTTTTGCAACTGGCATGGAATCACATGCAGCTCCGTGCACCAAAGAGTTACTGAGTTGAACTTACAAGGTTATCAATTGCATGGGCTCATATCTTCACAAGTTGGCAATCTCTCTTTTCTTATAAACATCAACCTCGCAAACAACGGCTTCTACGGAAAAATCCCGCAAGAATTGGGTCGATTGTTACAACTGCAGCAACTCTCTCTCGTCAACAACTCGTTAACTGGGGGAATTCCTACAAACTTGACAAGTTGCTCTAATCTCAAGGAGTTACACTTATCTGGGAACAATTTAATTGGTAAAATACCAATTGAAATGGCCTCTCTTCGGAAGCTTCAAGTTTTTGCTGTTGCAAAAAACAATATAACCGGAGAAGTCCCACCCTTCATAGGGAATCTTTCATCCCTAACAGTTCTATCAGTGGTTTTTAATAACTTAGAGGGAGATATTCCACAAGAAATATGCCTCCTCAAAAACTTGACAATTATAGCAATGGGTGTCAACAAATTGTCGGGTACATTTCCTTCTTGTCTTTACAATTTGTCATCTCTTACTATAATCTCAGCTACAGATAATCAATTTAATGGGTCTCTTCCACCCAACATGTTCCTCACCCTTCGCAATCTCCAAGTACTTGAAATTGGAGGGAATCAAATATCAGGTCCAATCCCCACTTCCATTGCAAATGCTTCGGTCCTTCAAATATTTGAGATAACTGAAAACCATTTTGTAGGACAAGTTCCAAGTCTAGGGAGGCAGAGAGATTTGTATATCCTAATTTTGTCAGAAAACAATCTAGGTGACAACTTAACTATGGATTTGGAGTTTTTAAACTCATTGACAAACTGTAGTAAGTTGCAATTTTTAGATATAGAATACAATAAGTTTGGAGGTCGTTTGCCAAATTCCTTGGGCAATTTATCTTCCCAACTCAGTGAACTATACATTGGGGGTAATCAGATATCAGGAAAAATTCTTGCAGAATTAGGAAATCTAATTAGCTTAACTCTCTTGAACATGGAATACAACCATTTTGAGGGTATTATTCCATCTACTTTTGGAAAGTTTCACAAGATGCAAGTATTAGATTTGGTTGGAAACAAGTTGTCAGGAGATATACCATCCATCATAGGCAACCTCAGTTTGTTGTATCATTTGGAGTTAGCCCATAATTTCTTAGAAGGAAATATTCCTCCAAGTATAGGAAACTGTCAAAAGTTACAATATCTTAACCTTTCCCAAAACAATCTTGGAGGAACTATACCTTTAGAGGTTTTTAGTCTTTCCTCTTTAACACTCTCCCTAGACTTGTCACGTAACTTATTGGGTGGTAGTATACTAGATGAAGTGGGCCAATTGAAAAATATTGGTGGGCTAGATGTCTCTGAGAATCATCTGTCAGGTAATATTCCTAGAACCATTGGAGAATGCTCAAGCTTGGAGTACCTTTATTTGCAGGGGAATTCCTTTCATGGAATCATCTCATCCTCTTTGGCTTCACTAAAAGGTCTTCGACATTTAGACCTATCACGAAATCACTTGTCTGGATTAATTCCTGATGTTTTGCAGAATATGACTTTCTTAGAATACTTAAATGTATCATTTAACATGTTGGATGGTGAGGTACCAACTGAAGGTGTCTTTCGAAATACAAGTGAGTTAGCAGTGACTGGAAACAACAAGCTTTGTGGAGGTGTTTCAGAGATGCATTTACCACCATGCCCTGTCAAAAGTGATAAACTTGCAAAACACCACAATTTCAGGTTGAAAGCAGCGATAATTAGTGTAGTTGCTTTTCTACTCATACTGTCATTCATTTTCACTTTCTATTGGATGAGGAAAAGTAGCAAGAAACCATCTTCTGATTCACCAACAATTGACCAGCTGGCCAAGGTTTCATACCAAAACCTACATCGCAAAACTGATGGGTTTTCAACAAGAAACTTGATAGGATCTGGAAGTTTTGGCTCTGTGTACAAAGGAACTATTGAGCCAGAAGACACAGTTGTTGCCATAAAGGTCCTAAATCTTCAAAAGAAAGGAGCTCACAAGAGTTTCATTGCTGAATGCAATGCACTCAAAAATATCAGGCATCGAAATCTGGTTAAGATTTTAACATGTTGTTCTAGCATAGATTTCAAAGGTCAAGAATTTAAAGCTCTTGTTTTTGAGTACATGACAAATGGAAGCTTAGAAAGTTGGTTGCATCCAGCAGCAGATATTGCATATCATCGTAGATCATTTAACCTTGAGGAAAGGTTAAATATTATTAATGATGTCGCTTTAGCAGTTCATTATCTTCACTACGAATGTGACCAACCTGTCATTCATTGTGATTTGAAACCTGGCAATGTCCTTCTTGATGATTGCATGGTAGCTCATGTAAGTGATTTTGGTCTAGCAAGATTGCTCTCGAGTGTTGGAGTCTCTTTGACGCAAAGTAGCACAATTGGAATAAAGGGAACTGTTGGTTATGCTCCTCCAGAGTATGGAATGGGTTCCGAGGTGTCAACTGAAGGCGATATGTATAGCTTCGGAATTCTGATTTTAGAAATGTTAACCGGAAAGAGACCCACAGATGAAATGTTTAAAGATGGTCACAATCTCCATAATTATGTTAAAATTTCACTTTTGAATGACTTTTTGCAGATTGTGGACCTCACTATTCTCACCGATGTAGAAAATGCCAGTAACAATGAGAACCTTAACCTTATGCATCCTAATGTAGAATATTGTTTGCGTTCGCTTTTTAATATTGCACTTGCTTGTTCAGTGGAATCGCCAAAAGAAAGAATGAGTATAATTGATGTCAACAAGGAGCTCAATCTAATCAAAAGTTTCTTCCCTTCGGGAATTTAA 3069 0.3776 MKLFSLMLPAFCSTYLHLFLLFTLNSLCFGPNTTASTLGNQTDHLALLKFKESISNDPYGILFSWNSSTHFCNWHGITCSSVHQRVTELNLQGYQLHGLISSQVGNLSFLININLANNGFYGKIPQELGRLLQLQQLSLVNNSLTGGIPTNLTSCSNLKELHLSGNNLIGKIPIEMASLRKLQVFAVAKNNITGEVPPFIGNLSSLTVLSVVFNNLEGDIPQEICLLKNLTIIAMGVNKLSGTFPSCLYNLSSLTIISATDNQFNGSLPPNMFLTLRNLQVLEIGGNQISGPIPTSIANASVLQIFEITENHFVGQVPSLGRQRDLYILILSENNLGDNLTMDLEFLNSLTNCSKLQFLDIEYNKFGGRLPNSLGNLSSQLSELYIGGNQISGKILAELGNLISLTLLNMEYNHFEGIIPSTFGKFHKMQVLDLVGNKLSGDIPSIIGNLSLLYHLELAHNFLEGNIPPSIGNCQKLQYLNLSQNNLGGTIPLEVFSLSSLTLSLDLSRNLLGGSILDEVGQLKNIGGLDVSENHLSGNIPRTIGECSSLEYLYLQGNSFHGIISSSLASLKGLRHLDLSRNHLSGLIPDVLQNMTFLEYLNVSFNMLDGEVPTEGVFRNTSELAVTGNNKLCGGVSEMHLPPCPVKSDKLAKHHNFRLKAAIISVVAFLLILSFIFTFYWMRKSSKKPSSDSPTIDQLAKVSYQNLHRKTDGFSTRNLIGSGSFGSVYKGTIEPEDTVVAIKVLNLQKKGAHKSFIAECNALKNIRHRNLVKILTCCSSIDFKGQEFKALVFEYMTNGSLESWLHPAADIAYHRRSFNLEERLNIINDVALAVHYLHYECDQPVIHCDLKPGNVLLDDCMVAHVSDFGLARLLSSVGVSLTQSSTIGIKGTVGYAPPEYGMGSEVSTEGDMYSFGILILEMLTGKRPTDEMFKDGHNLHNYVKISLLNDFLQIVDLTILTDVENASNNENLNLMHPNVEYCLRSLFNIALACSVESPKERMSIIDVNKELNLIKSFFPSGI 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4110g00004 1022 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Gabi4110g00004 1022 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 796 1020 - -
Gabi4110g00004 1022 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 79 345 - -
Gabi4110g00004 1022 ProSiteProfiles Protein kinase domain profile. 714 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4110g00004 1022 Pfam Protein kinase domain 716 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4110g00004 1022 FunFam LRR receptor-like serine/threonine-protein kinase EFR 685 795 - -
Gabi4110g00004 1022 SUPERFAMILY Protein kinase-like (PK-like) 687 1011 IPR011009 -
Gabi4110g00004 1022 SMART LRR_sd22_2 378 401 - -
Gabi4110g00004 1022 SMART LRR_sd22_2 276 302 - -
Gabi4110g00004 1022 SMART LRR_sd22_2 131 160 - -
Gabi4110g00004 1022 SMART LRR_sd22_2 426 452 - -
Gabi4110g00004 1022 SMART LRR_sd22_2 227 253 - -
Gabi4110g00004 1022 SMART LRR_sd22_2 571 603 - -
Gabi4110g00004 1022 SUPERFAMILY L domain-like 42 336 - -
Gabi4110g00004 1022 Gene3D Ribonuclease Inhibitor 323 652 IPR032675 -
Gabi4110g00004 1022 Pfam Leucine Rich Repeat 355 377 IPR001611 GO:0005515
Gabi4110g00004 1022 FunFam LRR receptor-like serine/threonine-protein kinase EFR 346 650 - -
Gabi4110g00004 1022 Gene3D Ribonuclease Inhibitor 40 322 IPR032675 -
Gabi4110g00004 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Gabi4110g00004 1022 SMART serkin_6 714 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4110g00004 1022 SMART LRR_typ_2 475 498 IPR003591 -
Gabi4110g00004 1022 SMART LRR_typ_2 450 474 IPR003591 -
Gabi4110g00004 1022 SMART LRR_typ_2 251 275 IPR003591 -
Gabi4110g00004 1022 SMART LRR_typ_2 203 227 IPR003591 -
Gabi4110g00004 1022 SMART LRR_typ_2 571 594 IPR003591 -
Gabi4110g00004 1022 SMART LRR_typ_2 131 155 IPR003591 -
Gabi4110g00004 1022 SMART LRR_typ_2 276 300 IPR003591 -
Gabi4110g00004 1022 SMART LRR_typ_2 402 425 IPR003591 -
Gabi4110g00004 1022 SMART LRR_typ_2 595 620 IPR003591 -
Gabi4110g00004 1022 PANTHER OS04G0122200 PROTEIN 112 225 - -
Gabi4110g00004 1022 Pfam Leucine Rich repeat 473 489 IPR001611 GO:0005515
Gabi4110g00004 1022 Pfam Leucine Rich repeat 154 170 IPR001611 GO:0005515
Gabi4110g00004 1022 Gene3D Phosphorylase Kinase; domain 1 695 795 - -
Gabi4110g00004 1022 Gene3D Transferase(Phosphotransferase) domain 1 796 1017 - -
Gabi4110g00004 1022 ProSitePatterns Protein kinases ATP-binding region signature. 720 743 IPR017441 GO:0005524
Gabi4110g00004 1022 SUPERFAMILY L domain-like 379 634 - -
Gabi4110g00004 1022 Pfam Leucine rich repeat 549 608 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4110g00004 Gabi-Chr4110 45832 49038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4110g00004 40 1018 Receptor kinase-like Gene Family AT3G47570 45.711 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi4110g00004 Pkinase 5.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4110g00004 - - gmx:100792724 1402.88