LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4110g00003	ATGAAGCCTTTTTCTCTCATGTTACTTGCATTTTGCTCTACATTCCTTCACCTATTTCTTCTCTTTACTGTGAACTCATTGTGGTTTGGCCCAAACACAACTGCCTCTACATTGGGAAACCAAATTGACCATTTGGCATTGCTCAAATTAAAGGAATTAATATCCAGTGACCCATATGGAATCTTGTTTTCATGGAATAGTTCTACCCACTTTTGCAACTGGCATGGAATCACATGCAACCCCATGAACCAAAGAGTTACCGAGTTGAACCTACAAGGTTATCAATTGCATGGGCTCATATCTCCACAAGTTGGCAATCTCTCTTTTCTTATAAACCTCAACCTCGCAAATAACAGCTTCTTCGGAAAAATCCCACAAGAATTGGGTCGATTGTTACAACTGCAGCAACTCTCTCTCATCAACAATTTGTTGACCGGTGGAATTCCTACAAACTTGACATGTTTCTCTTCTCTCAAAGGCTTATTCTTAGCTGGGAACAATCTGATTGGCAAAATACCAATTGAAATTGCATCTCTAAGGAAACTTCAATATTTTACTGTTGCAAAAAACAATTTAACCGGAGGGTTCCCACCCTTCATATGGAACCTTTCATCCCTAACTTTTTTCTCGATGGCCTTCAATAACCTGGAGGGAGATATTTCGCAAGAAATATGCCGCCCAAAAAACCTGACATTTATATCAATGGCTTCCAACAAAATGTCGGGTACATTTCCTTCTTGTCTTTACAATATGTCATCTCTTACTTTAATCTCAGTTCCATTGAATAAATTTAATGGCTCTCTTCCTCCAAACATGTTCCGCACCCTTCCAAATCTCCAAGTATTTGAAATTGGCAAGAATCAAATGTCAGGTCCAATCCCCACTTCCATTGCAAATGCTTTTGTCCTTCAATCACTTGATATCAGTAGAAACTATTTTGTAGGACAAGTTCCCAGTCTGGGGAAGCTAAGAGAGCTGCAATTCCTGCAAATGGCTCGCTCCAATCTAGGTGACAATTTAACTATGGATTTGGAGTTTTTGAAATCATTGTCCAATTGTAGTAAGTTACAAGTGTTAGATATGGCCTACAATAATTTTGGAGGTCATTTGCCAAATTGCTTAGGCAATTTATCCTCCCAACTCAGTGAACTATTTATTGGGGGTAATCAAATATTAGGACAAATTCCTGCAGAGTTAGGAAATCTAATTAGTTTTATTCTCTTGACCATGGAAAAAAATAGTTTTGAGGGTATTATTCCATCTACTTTTGGAAAATTTCACAATATGCAAGTTTTAGGTTTGAGTGAAAACAAGTTGTCAGGAGATATACCATCCATCGTAGGCAACCTCAGTTTGTTGTATTATATAGGTTTAGACCAAAATTTTTTAGAAGGAAACATTCCTCTAAGTATACGAAACTGCCAAAAGCTACAATATCTAGCCCTTTCCCGAAACAACCTTAGAGGAACCATACCCTTAGAGATTTTTAGTCTTTCCTCTTTAACAAATTTACTAGACTTGTCACACAACTCATTGAGTGGTAGTCTACCAGGTGAAGTGGGCCAATTGAAAAATATTGATGAGATGGATGTCTCTAAGAATAACCTATCTGGTAATATTCCTGGAACCATTGGAGAATGCTCAAGCTTGGAGTACCTTTATTTGCAGGGGAATTCCTTCCATGGAATCATACCATCCTCTTTGGCTTCACTAAAAGGTCTTCGACATTTAGACCTATCACAAAATCACTTGTCTGGATCAATTCCTGGTGTTTTGCAAAATATTGCTTTCTTAGAATACTTAAATGTGTCATTTAACATGTTGGATGGTGAGGTACCAACACAAGGTGTCTTTCGAAACGCAAGTGAGTTAGCAGTGACTGGAAACGACAATCTTTGTGGAGGTGTTTCAAAGCCGCATCTACCGCCATGCCCTGTCAAAGGTGATCAACATGCAAAACACCATAATTTCAGGTTGATAGCAGCAATAGTTAGTGTAGTTGCTTTTCTTATCATATTGTCATTCATTCTCACATTCTATTGGAAGAGGAAAACACGAAAGAAACCATCTTTTGATTCACCAACAATTGACCAGCTGGCCAAGGTTTCATACCAAAACCTACACCTTGGAAGCGATGGGTTTTCAATAAGAAACTTGATAGTATCTGGAAGTTTTGGCTCTGTGTACAAAGGAACTATTGAGCCAGAAGACACAATTGTTGCCATAAAGGTCCTAAATCTTCAACAAAAGGGAGCTCATACGAGTTTCATTGCTGAATGCAATGCACTTAAAAATATTAGGCATCGAAATCTGGTTAAGATTTTAACATGTTGTTCTAGCACAGATTTCAAAGGTCAAGAATTTAAAGCTCTTGTGTTTGAGTACATGGCAAATGGAAGCTTAGAAAGTTGGTTGCATCCAGCAGCAGATATTGCAGATCGGCCTAGATCATTGAACCTTGAGGAAAGGTTAAATATTATTAATGATGTTGCTTCAGCAGTCTATTATCTTCACTATGAATGTGAGCAAGTTGTCATTCATTGTGATTTGAAGCCGGGTAATGTTCTTCTTGATGATTGCATGGTGGCTCATGTGAGTGATTTTGGCCTAGCAAGATTGCTCTCAAGTGTTGGAGTCTCTTTGACGCAAAGTAGCACAATTGGAATAAAGGGAACTATTGGTTATGCTCCTCCAGAGTATGGAATGGGTTCCGAGGTGTCAATTGAAGGCGATATGTATAGCTTTGGAATTCTGATTTTAGAAATGTTAACCGGAAGGAGACCCACAGATGAAATGTTTAATGATGGTCACAATCTCCATGATTATGTTAAATTTTCACTTTCGAATCACCTTTTGCAGATTGTGGACCTGACTATTCTCACCGATGTAGAAAATGCCACTGACAATGAGAACCTTAGCCTTATGCATCCTAATGTAGAAAACTGTTTGCGTTCTCTTTTTAAGATTGCACTTGTCTGTTCAGTGGAATCTCCAAAAGAAAGAATGAGTATGATTGATGTCAACAAGAAGATCAATCTAATCAAAAGTCTTTTCCCTTCAAGAATTTAA	3069	0.3806	MKPFSLMLLAFCSTFLHLFLLFTVNSLWFGPNTTASTLGNQIDHLALLKLKELISSDPYGILFSWNSSTHFCNWHGITCNPMNQRVTELNLQGYQLHGLISPQVGNLSFLINLNLANNSFFGKIPQELGRLLQLQQLSLINNLLTGGIPTNLTCFSSLKGLFLAGNNLIGKIPIEIASLRKLQYFTVAKNNLTGGFPPFIWNLSSLTFFSMAFNNLEGDISQEICRPKNLTFISMASNKMSGTFPSCLYNMSSLTLISVPLNKFNGSLPPNMFRTLPNLQVFEIGKNQMSGPIPTSIANAFVLQSLDISRNYFVGQVPSLGKLRELQFLQMARSNLGDNLTMDLEFLKSLSNCSKLQVLDMAYNNFGGHLPNCLGNLSSQLSELFIGGNQILGQIPAELGNLISFILLTMEKNSFEGIIPSTFGKFHNMQVLGLSENKLSGDIPSIVGNLSLLYYIGLDQNFLEGNIPLSIRNCQKLQYLALSRNNLRGTIPLEIFSLSSLTNLLDLSHNSLSGSLPGEVGQLKNIDEMDVSKNNLSGNIPGTIGECSSLEYLYLQGNSFHGIIPSSLASLKGLRHLDLSQNHLSGSIPGVLQNIAFLEYLNVSFNMLDGEVPTQGVFRNASELAVTGNDNLCGGVSKPHLPPCPVKGDQHAKHHNFRLIAAIVSVVAFLIILSFILTFYWKRKTRKKPSFDSPTIDQLAKVSYQNLHLGSDGFSIRNLIVSGSFGSVYKGTIEPEDTIVAIKVLNLQQKGAHTSFIAECNALKNIRHRNLVKILTCCSSTDFKGQEFKALVFEYMANGSLESWLHPAADIADRPRSLNLEERLNIINDVASAVYYLHYECEQVVIHCDLKPGNVLLDDCMVAHVSDFGLARLLSSVGVSLTQSSTIGIKGTIGYAPPEYGMGSEVSIEGDMYSFGILILEMLTGRRPTDEMFNDGHNLHDYVKFSLSNHLLQIVDLTILTDVENATDNENLSLMHPNVENCLRSLFKIALVCSVESPKERMSMIDVNKKINLIKSLFPSRI	1022

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4110g00003	1022	SUPERFAMILY	L domain-like	380	634	-	-
	Gabi4110g00003	1022	SMART	serkin_6	714	975	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4110g00003	1022	Gene3D	Ribonuclease Inhibitor	40	320	IPR032675	-
	Gabi4110g00003	1022	ProSiteProfiles	Protein kinase domain profile.	714	979	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4110g00003	1022	Pfam	Protein kinase domain	719	1004	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4110g00003	1022	Gene3D	Transferase(Phosphotransferase) domain 1	796	1018	-	-
	Gabi4110g00003	1022	Gene3D	Ribonuclease Inhibitor	339	653	IPR032675	-
	Gabi4110g00003	1022	SUPERFAMILY	L domain-like	43	335	-	-
	Gabi4110g00003	1022	Gene3D	Phosphorylase Kinase; domain 1	695	795	-	-
	Gabi4110g00003	1022	Pfam	Leucine rich repeat	549	608	IPR001611	GO:0005515
	Gabi4110g00003	1022	FunFam	LRR receptor-like serine/threonine-protein kinase EFR	346	650	-	-
	Gabi4110g00003	1022	SUPERFAMILY	Protein kinase-like (PK-like)	688	1009	IPR011009	-
	Gabi4110g00003	1022	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	845	857	IPR008271	GO:0004672\|GO:0006468
	Gabi4110g00003	1022	FunFam	LRR receptor-like serine/threonine-protein kinase GSO1	81	345	-	-
	Gabi4110g00003	1022	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	796	1021	-	-
	Gabi4110g00003	1022	Pfam	Leucine rich repeat N-terminal domain	43	80	IPR013210	-
	Gabi4110g00003	1022	Pfam	Leucine Rich Repeat	355	377	IPR001611	GO:0005515
	Gabi4110g00003	1022	PANTHER	OS04G0122200 PROTEIN	110	246	-	-
	Gabi4110g00003	1022	FunFam	LRR receptor-like serine/threonine-protein kinase EFR	685	795	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4110g00003	Gabi-Chr4110	22743	25950	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4110g00003	40	1018	Receptor kinase-like Gene Family	AT3G47570	44.299	0.0	802

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Gabi4110g00003		Pkinase	8.9e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4110g00003	-		-	gmx:100792724	1371.3