Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4110g00002 ATGTTAATTGAACCGGCTCGAGACGGGGATGTTACACTTTATGTCTCTGAGAATTATTTATCTGGTAATATTCCTAAAACCATAGGAGAATGCTCAAGCTTGGAGTACCTTTATTTGCGGGGGAATTCCTTCAATGGAATCATACCATCCTCTTTGGCTTCACTAAAAGGTCTTCGACATTTAGACCTATCACGAAATCACTTGTCTGGATCAATTCCTGATGTTTTGCAGAATATTACTTTCTTAGAATACTTAAATGTATCATTTAACATGTTAGATGGAGAGGTACCAACTAAAGGTGTCTTTCAAAATGTAAGTGAGTTATCAGTGACTGGAAACAACAAGCTTTGTGGAGGTGTTTCAGAGCTGCATCTACCGCCATGCCCTGTCAAAGGAAAAAAACATGCAAAACACCACAATTTCAGGTTGATAACATCAATAGTTAGTCCAATTGCTTTTCTTCTTGTATTGTCATTCATTCTCACTTTCTACTGGGGAAGGAAAAAAAGCAAGAAACCATCTTCTGATTCACCAACAATTGACCATTTAGCCAAGGTTTCATACCAAAATCTACATCGTGGAACTGATGGTTTTTCAATAAGAAACTTGATAGGATCTGGAAGCTTTGGCTCTGTGTACAAAGGAACTATTGAGCCAGAAGACACAATTGTTGCTATAAAGGTCCTAAATCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTGCTGAATGCAATGCACTCAAGAATATTAGGCATCGAAATCTGGTTAAGATTTTAACATGTTGTTCTAGCATAGATTTCAATGGTCAAGAATTTAAAGCTCTTGTTTTTGAGTACATGACAAATGGAAGCTTAGAAAGTTGGTTGCATCCAGCGGCAGACATTACATATCAGCCTAGATCATTGAACTTTGAGGAAAGGTTAAATATTATTAATGATGTTGCTTCAGCAGTTCATTATCTTCACTACGAATTTGAGCAAGCTGTCATTCATTGTGATTTGAAGCCTGGCAATGTTCTTCTTAATGATTGCATGGTAGCTCATGTGAGTGATTTTGGCCTAGCAAGATTGCTATCAAGTGTTGGAGTCTCTCTGATGCAAAGTAGCACAATTGGAATAAATGGAACTGTTGGTTATGCTCCTCCAGAGTATGGAATGGGTTCTAAGGTGTCACTTGAAGGCGATATGTACAGCTTTGGAATTTTGATTTTAGAAATTTTAACTGGAAGGAGACCTACAGATGAAATGTTTAAAGATGGTTATACTCTCCATAATTATGTTAAAATTACAATTTCCTATAATTTTGTGGAGATTGTAGACCCAACTATTCTCCCCAATGAATTAGAACAAACCACTAATATTGAGAACTTGGGTCTTACGCATCCTAGTGTAGAGAAATGTTTACTCTCTCTTTTTAGGATTGCACTTGCTTGTTCAATGGAATCACCAAAAGAAAGAATGAATATGGTTGACGTCATCAAGGAACTTAATCTGATCAAAAGATTATTCCCTTATGGGATTTAG 1524 0.3668 MLIEPARDGDVTLYVSENYLSGNIPKTIGECSSLEYLYLRGNSFNGIIPSSLASLKGLRHLDLSRNHLSGSIPDVLQNITFLEYLNVSFNMLDGEVPTKGVFQNVSELSVTGNNKLCGGVSELHLPPCPVKGKKHAKHHNFRLITSIVSPIAFLLVLSFILTFYWGRKKSKKPSSDSPTIDHLAKVSYQNLHRGTDGFSIRNLIGSGSFGSVYKGTIEPEDTIVAIKVLNLQKKGAHKSFIAECNALKNIRHRNLVKILTCCSSIDFNGQEFKALVFEYMTNGSLESWLHPAADITYQPRSLNFEERLNIINDVASAVHYLHYEFEQAVIHCDLKPGNVLLNDCMVAHVSDFGLARLLSSVGVSLMQSSTIGINGTVGYAPPEYGMGSKVSLEGDMYSFGILILEILTGRRPTDEMFKDGYTLHNYVKITISYNFVEIVDPTILPNELEQTTNIENLGLTHPSVEKCLLSLFRIALACSMESPKERMNMVDVIKELNLIKRLFPYGI 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4110g00002 507 Gene3D Transferase(Phosphotransferase) domain 1 280 502 - -
Gabi4110g00002 507 SUPERFAMILY L domain-like 12 118 - -
Gabi4110g00002 507 SMART serkin_6 198 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4110g00002 507 Pfam Leucine rich repeat 33 92 IPR001611 GO:0005515
Gabi4110g00002 507 PANTHER OS04G0122200 PROTEIN 12 496 - -
Gabi4110g00002 507 ProSiteProfiles Protein kinase domain profile. 198 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4110g00002 507 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 280 504 - -
Gabi4110g00002 507 ProSitePatterns Protein kinases ATP-binding region signature. 204 227 IPR017441 GO:0005524
Gabi4110g00002 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 329 341 IPR008271 GO:0004672|GO:0006468
Gabi4110g00002 507 Gene3D Phosphorylase Kinase; domain 1 179 279 - -
Gabi4110g00002 507 Pfam Protein kinase domain 200 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4110g00002 507 Gene3D Ribonuclease Inhibitor 8 137 IPR032675 -
Gabi4110g00002 507 FunFam LRR receptor-like serine/threonine-protein kinase EFR 168 279 - -
Gabi4110g00002 507 SUPERFAMILY Protein kinase-like (PK-like) 171 499 IPR011009 -
Gabi4110g00002 507 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 11 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4110g00002 Gabi-Chr4110 3981 9010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4110g00002 12 98 Receptor kinase-like Gene Family AT3G47570 36.364 5.00e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi4110g00002 Pkinase 2.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4110g00002 - - gmx:100792724 772.311