Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4108g00044 ATGAAGCCTTTTTCACTCACGTTACCTGCATTTTGCTCTACATGCCTTCACCTATTTCTTCTCTTAATTACTTTGAACTCACTCTGGTTTGGCCCAGAAACAACTGCCTCCGCATCAGGAAATGAAACTGATCACTTGGCATTGCTCAAATTCAAGGAATCAATATCCAATGACCCATATGGAATCTTGGCCACTTGGAATAGTTCTACCCACTTTTGCAACTGGCATGGAATTACATGCAGCCCCATGCATCAAAAAGTTACTGAGTTGAACCTACAAGGCTATCAGTTGTATGGACTCATATCTCCACAAGTTGGCAATCTCTCTTTTCTTAGAAACCTCAACCTCACAAACAACTACTTCTACGGAAAAATCCCACAGGAGTTGGGTCGATTGTTACGACTGCAGCAACTCTCTCTCATCAATAACACATTGACTGGGGAAATTCCTACAAACTTGACCAGTTGCTCTAATCTCAAAGAGTTACACTTATCTGGGAACAATCTGATTGGCAAAATACCAATTGAAATTGCCTCTTTTCGAAAACTTCAAATTTTTGCTGTTCGAAAAAACAATTTAACCGGAGGAGTCCCAGCATTCATAGGGAACCTTTCATCCCTAACAGTTCTCTCGATAAGTTATAATAACTTAGAGGGAGATATTCCACAAGAAATATGCCTCCTCAAAAATTTGACAAATATAGGAGTGGCTGTCAACAAATTGCGTGGTATATTTCCTTCTTGTCTTTACAATATGTCATCTCTTACTTCAATCTCAACTGCAATGAATCAATTTAATGGCTCTCTTCCATCCAACATGTTCCACACCCTTCCTAATCTCCAATTATTTGAAATTGGCCGGAATCAAATCTCAGGTCCAATCCCCACTTCCATTGCAAATTCTTCTGTCCTTCAAGTACTTGATATCGTTAAAAACCATTTTGTAGGACAAGTTCCAAGTCTAGGGAAGCTAAAAGACATATATTACCTAAGTTTGTCTCAGAACAATCTAGGTGACAATTTAACTACGGATTTGGAGTTTTTAAAATCATTGACAAACTGTAGTAAGTTGCAACATTTAGGTATTGCCTACAATAAGTTTGGAGGTCGTTTGCCAAATTGCTTGGGCAATTTATCCTCCCAAATCAATAAACTATATATTGGGGGTAATCAAATATCAGGACAAATTCCTGCAGAATTAGGAAATCTAATTAACTTAACTCTCTTGGGCATGGAAAATAGTCGTTTTGAGGGGATTATTCCATTTTCTTTTGGAAGGTTTCAGAATATGCAACTTTTAAATTTGGGTGGAAACAAGCTGTCAGGAGATATACCATTCATCATAGGCAACCTCAGTTTATTGTATTTTTTGAATTTATCCCAAAATTTGTTAGAAGGAAAAATTCCTCTAAGTATAGGAAACTGTCAAAATTTGCAAGTTCTAAACCTTTCTAGAAACAACCTTAGAGGAACAATACCCTTTGAGATTTTTAATCTTTCCTCGTTAACAAATTTACTAGACTTGTCAGACAACTCATTGAGTGGTAGTCTACCAGATGAAGTGGGACAATTGAAAAATATTGATGTCCTAGATGTCTCAGAGAATCGTTTATCTGGTAATATCCCTGGGACCATTGCAGAATGCTTAAGCTTGGAGTACCTTTATTTGCAGGGGAATTCCTTCCATGGAATTATCCCATCCTCTCTGGCTTCACTAAAAGGTCTTCGACATTTAGACCTATCACGAAATCACTTGTCTGGATCAATTCCTGATGTTTTGCAGAATATTTCTTTCTTAGAATACTTAAATGTATCCTTTAACATGTTGGATGGTGAGGTACCAACGGAAGGTGTCTTTCGAAATGCAAGTGAATTAGCAGTGACCGGAAACAATAAGCTTTGTGGAGGTGTTTCGGAGCTACATCTACCGCTATGCCCAGTCAAACGTGAGAAACATGCAAAACACCACAATCTAAGGTTGATATCAGCGATAATTAGTGTAATTGCTTTTCTTCTCATACTATCATTCATTCTCACTTTCTACTGGATGAGGAAAAGAAACAAGAATCCATCTTCTGATTCACCAACAATTGACCAGTTGGCCAAGGTTTCATACCAAAACCTACACCGTGGAACCGATGGGTTTTCGACAAGAAACTTGATAGGATCTGGAAGCTTTGGCTCTGTATACAAGGGAACTATTGAGCCCGAAGACACAGTTATTGCCATAAAAGTCCTAAATCTTCAAAAGAAAGGAGCTCACAAAAGTTTCATTGTTGAATGCAATGCACTCAAAAATATTAGGCATCGAAATCTGGTTAAGATTTTAACATGTTGTTCTAGCACAGATTTCAAAGGTCAAGAATTTAAAGCTCTTGTTTTTGAGTACATGACAAATGGAAGCTTAGAAAGTTGGTTGCATCCAGCAGCAAATATTGCAGATCAGCATAGATCATTAAACCTTGAGGAGAGGTTAACTATTATTACTGATGTTGCTTCAGCATTTCATTATCTTCACTACGAATGTGAGCAAACTATCATTCACTGTGATTTGAAGCCTGGAAATGTTCTTCTTGATGATTGTATGGTAGCTCACGTGAGTGATTTTGGCCTAGCAAGATTGCTCTCAAGTGTTGGAGTCTCTCTCACACAAAGTAGCACTGTTGGAATAAAGGGGACCATTGGTTATACTCCTCCAGAGTATGGAATGAATTTTGCGGTGTCAATTGAAGGTGATATGTATAGTTTTGGAATTTTGATTTTAGAAATGTTAACCAGAAGGAGACCCACAGAAGAAATGTTTCAAGATGGTCATAATCTCCACAATTATGTTGAAATTTCAATTTCAAATCACCTTTTACAGATTGTGGACCCGACTATTCTCCCCTACGAATTAGAACAGGGTACTGGCAATAAGAAACTTGGTCTTATGCATCCTAGTGTAGAGAGATGTTTAATTTCTCTTTTTAGGATTGCACTTGCTTGTTCAATGGAATCACCAAAAGAAAGAATGAGTATGATTGATGTCATTAGGGAGCTTAATCTGATCAAAAGTTTCTTCCCTTCTAGGATTTAG 3075 0.3759 MKPFSLTLPAFCSTCLHLFLLLITLNSLWFGPETTASASGNETDHLALLKFKESISNDPYGILATWNSSTHFCNWHGITCSPMHQKVTELNLQGYQLYGLISPQVGNLSFLRNLNLTNNYFYGKIPQELGRLLRLQQLSLINNTLTGEIPTNLTSCSNLKELHLSGNNLIGKIPIEIASFRKLQIFAVRKNNLTGGVPAFIGNLSSLTVLSISYNNLEGDIPQEICLLKNLTNIGVAVNKLRGIFPSCLYNMSSLTSISTAMNQFNGSLPSNMFHTLPNLQLFEIGRNQISGPIPTSIANSSVLQVLDIVKNHFVGQVPSLGKLKDIYYLSLSQNNLGDNLTTDLEFLKSLTNCSKLQHLGIAYNKFGGRLPNCLGNLSSQINKLYIGGNQISGQIPAELGNLINLTLLGMENSRFEGIIPFSFGRFQNMQLLNLGGNKLSGDIPFIIGNLSLLYFLNLSQNLLEGKIPLSIGNCQNLQVLNLSRNNLRGTIPFEIFNLSSLTNLLDLSDNSLSGSLPDEVGQLKNIDVLDVSENRLSGNIPGTIAECLSLEYLYLQGNSFHGIIPSSLASLKGLRHLDLSRNHLSGSIPDVLQNISFLEYLNVSFNMLDGEVPTEGVFRNASELAVTGNNKLCGGVSELHLPLCPVKREKHAKHHNLRLISAIISVIAFLLILSFILTFYWMRKRNKNPSSDSPTIDQLAKVSYQNLHRGTDGFSTRNLIGSGSFGSVYKGTIEPEDTVIAIKVLNLQKKGAHKSFIVECNALKNIRHRNLVKILTCCSSTDFKGQEFKALVFEYMTNGSLESWLHPAANIADQHRSLNLEERLTIITDVASAFHYLHYECEQTIIHCDLKPGNVLLDDCMVAHVSDFGLARLLSSVGVSLTQSSTVGIKGTIGYTPPEYGMNFAVSIEGDMYSFGILILEMLTRRRPTEEMFQDGHNLHNYVEISISNHLLQIVDPTILPYELEQGTGNKKLGLMHPSVERCLISLFRIALACSMESPKERMSMIDVIRELNLIKSFFPSRI 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4108g00044 1024 Pfam Leucine Rich Repeat 158 175 IPR001611 GO:0005515
Gabi4108g00044 1024 Gene3D Ribonuclease Inhibitor 351 645 IPR032675 -
Gabi4108g00044 1024 SUPERFAMILY Protein kinase-like (PK-like) 687 1014 IPR011009 -
Gabi4108g00044 1024 ProSitePatterns Protein kinases ATP-binding region signature. 721 744 IPR017441 GO:0005524
Gabi4108g00044 1024 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Gabi4108g00044 1024 Gene3D Ribonuclease Inhibitor 205 273 IPR032675 -
Gabi4108g00044 1024 FunFam LRR receptor-like serine/threonine-protein kinase EFR 343 651 - -
Gabi4108g00044 1024 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 222 318 - -
Gabi4108g00044 1024 Gene3D Ribonuclease Inhibitor 274 350 IPR032675 -
Gabi4108g00044 1024 Gene3D Ribonuclease Inhibitor 41 200 IPR032675 -
Gabi4108g00044 1024 Gene3D Phosphorylase Kinase; domain 1 696 796 - -
Gabi4108g00044 1024 SUPERFAMILY L domain-like 381 635 - -
Gabi4108g00044 1024 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 797 1023 - -
Gabi4108g00044 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672|GO:0006468
Gabi4108g00044 1024 FunFam LRR receptor-like serine/threonine-protein kinase EFR 686 796 - -
Gabi4108g00044 1024 PANTHER OS04G0122200 PROTEIN 122 231 - -
Gabi4108g00044 1024 Pfam Protein kinase domain 717 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4108g00044 1024 Pfam Leucine rich repeat 550 609 IPR001611 GO:0005515
Gabi4108g00044 1024 Gene3D Transferase(Phosphotransferase) domain 1 797 1020 - -
Gabi4108g00044 1024 ProSiteProfiles Protein kinase domain profile. 715 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4108g00044 1024 SMART serkin_6 715 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4108g00044 1024 SMART LRR_typ_2 132 156 IPR003591 -
Gabi4108g00044 1024 SMART LRR_typ_2 572 595 IPR003591 -
Gabi4108g00044 1024 SMART LRR_typ_2 596 621 IPR003591 -
Gabi4108g00044 1024 SMART LRR_typ_2 252 276 IPR003591 -
Gabi4108g00044 1024 SMART LRR_typ_2 451 475 IPR003591 -
Gabi4108g00044 1024 SMART LRR_typ_2 502 524 IPR003591 -
Gabi4108g00044 1024 SMART LRR_typ_2 204 228 IPR003591 -
Gabi4108g00044 1024 SMART LRR_typ_2 476 499 IPR003591 -
Gabi4108g00044 1024 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 41 201 - -
Gabi4108g00044 1024 SUPERFAMILY L domain-like 41 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4108g00044 Gabi-Chr4108 457245 460617 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4108g00044 41 1020 Receptor kinase-like Gene Family AT3G47570 45.867 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi4108g00044 Pkinase 3.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4108g00044 - - gmx:100792724 1427.15