Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4108g00043 ATGAAGCCTTTTTCACTCACGTTACCTGCATTTTGCTCTACATGCCTTCACCTATTTCTTCTCTTAATTACTTTGAATTCATTCTGGTTTGGCCCAGAAACAACTGCCTCTGCATCAGGAAATGAAACTGATCACTTGGCATTGCTCAAATTCAAGGAATCAATATCCAATGACCCATATGGAATCTTGGTCTCTTGGAATAGTTCTACCCACTTTTGCAACTGGCATGGAATTACATGCAGCCCCATGCATCAAAAAGTTACTGAGTTGAACCTACAAGGCTATCAGTTGCATGGACTCATATCTCCACAAGTTGGCAATCTCTCTTTTCTTAGAAACATCAACCTCGCAAACAACAGCTTCTATGAAAAAATCCCACAGGAGTTGGGTCGATTGTTACGACTGCAACATCTCTCTCTCATCAATAACACGTTGACTGGGGAAATTCCTACAAACTTGACCAGTTGCTCTAATCTCAAAGAGATACACTTATCTGGCAACAATCTGATTGGCAAAATACCAATTGAAATTGCCTCTCTTCGGAAACTTCAATTTTTTGCTGTTCGGAACAACAATTTAACCGGAGGAGTCCCGCCCTTCATAGGGAATCTTTCATCCCTAACAGTTTTCTCGGTGGCTTATAATAACTTAGAAGGAGATATTCCACAAGAAATATGCCGCCTCAAAAACTTGACAATTATAGGAGTGCCTGTGAACAAACTGTCTGGTATATTTCCTTCTTGTCTTTTCAATATGTCATCTCTTACTTTTATCTCAGCTACAATGAATCAATTTAATGGCTCTCTTCCACCCAACATGTTCAACACCCTTCCCAATCTCCAAGTATTTGAAATTGGCGAGAATCAAATGTCAGGTCCAATCCCCACTTCCATTGCAAATGCTTCTGTCCTTCAAATATTTGCGATAGGTCAAAACCATTTTGTTGGAAAAGTTCCGAGTATGGGGAAGCTGAGAGAACTGTATTTCCTAGATTTGTCTGTAAACAATCTAGGTGACCATTTAACTACAGATTTGATGTTAAAATCATTGACAAATTGTAGTAAGTTGAGACTGTTAGGTATTGCCACCAATAAGTTTAGAGGTCATTTGCCAAATTTCTTGGGCAATTTATCCTCCCAACTCAGTCATCTATATATTGGGGGTAATCAAATATCAGGAAAAATTCCTATGGAATTAGGAAATCTAATTAGCTTAACTCTCTTGTCTATGGAAGATAACCTTTTTGAAGGGATTATTCCATTTGCTTTTGGAAAGTTTCACAATATGCAAAGCTTAAATTTGGGTGGAAACAAGCTGTCAGGAGATATACCATCCATCATAGGAAACCTTAGTTTGTTGTATTATTTCGATTTAAAGCAAAATTTGTTAGAAGGAAATATTCCTCTGAGTATACGAAACTGCCAAAAGTTACAATATCTAGACCTTTCACAAAACAACCTTAAAGGAACCATACCCTTAGAGGTTTTTACTATTTCCTCTTTAACAAGTTTACTAGACCTGTCACACAACTCATTAAGTGGTAGTCTACCAGATGAAGTGGGCCAATTGAAAAATATTGATGTGCTAAGCGTCTCTGAGAATCATCTATCTGGTAATATTCCTGGAACCATTGGAGAATGCTCAAGCATGGAGTACCTTTATTTGCAGGGGAATTCCTTCCATGGAATCATACCAACCTCTTTGGCTTCACTAAAAGGTCTTCGACATTTAGACCTATCACGAAATCACTTGTCTGGATCAATTCCTGGTGTTTTGCAGAATATTGCTTTCCTAGAATACTTAAATGTATCATTTAACATGTTGGATGGTGAGGTACCAACAAAAGGTGTCTTTCGAAACGCAAGTGAGTTAGCAGTGACTGGAAACAACAATCTTTGTGGAGGTGTTTCAGAGCTGCATCTACCGCCATGCCCTGTCAAAGGTGACCAACATGCAAAACACCATAATTTCAAGTTGATAGCAGCAATAGTTAGTATAGTTGCTTTTCTTCTCATATTGTCATTCATTCTCACTTTCTACTGGATGAGAAAAAAAAGCAATAAATCATCTTCTGATTCATCAACAATCGACCAGTTGGCCAAGGTTTCATACCAAAACCTACAGCGTGGAACTGATGGGTTTTCAACAAGAAACTTGATAGGATCTGGAAGTTTTGCCTCTGTGTACAAAGGAACTATTGAGCCCGAAGACACAGTTGTTGCTGTAAAAGTCCTAAATCTTCAAAAGAAAGAAGCTCACAAGAGTTTCATTGTTGAATGCAATGCACTCAAAAATATTAGGCACCGAAATCTGGTTAAGGTTTTAACATGTTGTTCTAGCATAAATTTCAAAGGTCAAGAATTTAAAGCTCTTGTTTTTGAGTACATGACAAATGGAAGCTTAGAAAGTTGGTTGCATCCAGCAGCAGATATTGCAGATCAACATAGATCATTGAACCTTGAGGAGAGGTTAACTATTATTACTGATGTTGCTTCAGCATTTCATTATCTTCACTACGAATGTGAGCAAACTATCATTCATTGTGATTTGAAGCCTAGCAACGTTCTTCTTGATGATTGTATGGTAGCTCACGTGAGTGATTTTGGCCTAGCAAGATTGCTCTCAAGTGTTGGAGTCTCTCTCTCTCAAAGCAGCACAGTTGGAATAAAGGGGACCATTGGTTATACTCCTCCAGAGTACGGAATGGGTTTTGCAGTGTCAATTGAAGGTGATATGTATAGTTTCGGAATTTTAATTTTAGAAATGTTAACCGGAAGAAGACCGGCAGAAGAAATGTTTCAGGATGGTCATACTCTCCACAATTATGTAGAAATTTCAATTTCAAATCACCTTTTGCAGATTGTGGACCCGACTATTCTCCCCTACGAATTAGAACAGGGAACTAGCAAAGAGAAACTTGGTCTTATGCATCCTAATGTAGAGAGATGTTTATTTTCTCTATTTAGGACTGCGCTTGCTTGTTCAATGGAATCACCAAAAGAAAGAATGAGTATGATTGATGTCATTAGGGAGCTTAATCTGATCAAAAGTTTCTTCCCTTCTAGGACTTAG 3072 0.3812 MKPFSLTLPAFCSTCLHLFLLLITLNSFWFGPETTASASGNETDHLALLKFKESISNDPYGILVSWNSSTHFCNWHGITCSPMHQKVTELNLQGYQLHGLISPQVGNLSFLRNINLANNSFYEKIPQELGRLLRLQHLSLINNTLTGEIPTNLTSCSNLKEIHLSGNNLIGKIPIEIASLRKLQFFAVRNNNLTGGVPPFIGNLSSLTVFSVAYNNLEGDIPQEICRLKNLTIIGVPVNKLSGIFPSCLFNMSSLTFISATMNQFNGSLPPNMFNTLPNLQVFEIGENQMSGPIPTSIANASVLQIFAIGQNHFVGKVPSMGKLRELYFLDLSVNNLGDHLTTDLMLKSLTNCSKLRLLGIATNKFRGHLPNFLGNLSSQLSHLYIGGNQISGKIPMELGNLISLTLLSMEDNLFEGIIPFAFGKFHNMQSLNLGGNKLSGDIPSIIGNLSLLYYFDLKQNLLEGNIPLSIRNCQKLQYLDLSQNNLKGTIPLEVFTISSLTSLLDLSHNSLSGSLPDEVGQLKNIDVLSVSENHLSGNIPGTIGECSSMEYLYLQGNSFHGIIPTSLASLKGLRHLDLSRNHLSGSIPGVLQNIAFLEYLNVSFNMLDGEVPTKGVFRNASELAVTGNNNLCGGVSELHLPPCPVKGDQHAKHHNFKLIAAIVSIVAFLLILSFILTFYWMRKKSNKSSSDSSTIDQLAKVSYQNLQRGTDGFSTRNLIGSGSFASVYKGTIEPEDTVVAVKVLNLQKKEAHKSFIVECNALKNIRHRNLVKVLTCCSSINFKGQEFKALVFEYMTNGSLESWLHPAADIADQHRSLNLEERLTIITDVASAFHYLHYECEQTIIHCDLKPSNVLLDDCMVAHVSDFGLARLLSSVGVSLSQSSTVGIKGTIGYTPPEYGMGFAVSIEGDMYSFGILILEMLTGRRPAEEMFQDGHTLHNYVEISISNHLLQIVDPTILPYELEQGTSKEKLGLMHPNVERCLFSLFRTALACSMESPKERMSMIDVIRELNLIKSFFPSRT 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4108g00043 1023 PANTHER OS04G0122200 PROTEIN 124 225 - -
Gabi4108g00043 1023 FunFam Leucine-rich repeat receptor protein kinase EMS1 152 248 - -
Gabi4108g00043 1023 Pfam Leucine Rich repeat 473 488 IPR001611 GO:0005515
Gabi4108g00043 1023 PRINTS Leucine-rich repeat signature 571 584 - -
Gabi4108g00043 1023 PRINTS Leucine-rich repeat signature 477 490 - -
Gabi4108g00043 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 342 650 - -
Gabi4108g00043 1023 Gene3D Ribonuclease Inhibitor 40 321 IPR032675 -
Gabi4108g00043 1023 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 796 1023 - -
Gabi4108g00043 1023 ProSiteProfiles Leucine-rich repeat profile. 476 497 IPR001611 GO:0005515
Gabi4108g00043 1023 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 43 151 - -
Gabi4108g00043 1023 SUPERFAMILY L domain-like 379 634 - -
Gabi4108g00043 1023 SUPERFAMILY L domain-like 41 337 - -
Gabi4108g00043 1023 Gene3D Ribonuclease Inhibitor 322 653 IPR032675 -
Gabi4108g00043 1023 Gene3D Transferase(Phosphotransferase) domain 1 796 1019 - -
Gabi4108g00043 1023 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Gabi4108g00043 1023 ProSiteProfiles Protein kinase domain profile. 714 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4108g00043 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Gabi4108g00043 1023 Pfam Leucine rich repeat 549 608 IPR001611 GO:0005515
Gabi4108g00043 1023 Pfam Protein kinase domain 716 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4108g00043 1023 SMART LRR_typ_2 426 450 IPR003591 -
Gabi4108g00043 1023 SMART LRR_typ_2 402 425 IPR003591 -
Gabi4108g00043 1023 SMART LRR_typ_2 132 156 IPR003591 -
Gabi4108g00043 1023 SMART LRR_typ_2 571 594 IPR003591 -
Gabi4108g00043 1023 SMART LRR_typ_2 204 228 IPR003591 -
Gabi4108g00043 1023 SMART LRR_typ_2 498 523 IPR003591 -
Gabi4108g00043 1023 ProSitePatterns Protein kinases ATP-binding region signature. 720 743 IPR017441 GO:0005524
Gabi4108g00043 1023 SUPERFAMILY Protein kinase-like (PK-like) 687 1013 IPR011009 -
Gabi4108g00043 1023 Gene3D Phosphorylase Kinase; domain 1 694 795 - -
Gabi4108g00043 1023 SMART serkin_6 714 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4108g00043 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 684 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4108g00043 Gabi-Chr4108 435616 438831 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4108g00043 41 1023 Receptor kinase-like Gene Family AT3G47570 45.691 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi4108g00043 Pkinase 4.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4108g00043 - - gmx:100792724 1391.71