Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4108g00040 ATGAAGCCTTTTTCACTCACGTTACCTGCATTTTGCTCCACATGCCTTCATCTATTTCTTCTCTTGATTACTTTGAACTCACTCTGGCTTGGCCCAGAAACAACTGCCTCTGCATCAGGAAATGAAACTGATCACTTGGCATTGCTCAATTTCAAGGAATCAATATCCAATGACCCATCTGGAATCTTGGTCTCTTGGAATAGTTCTACCCACTTTTGCAACTGGCATGGAATTACATGCAGCCACATGCATCAAAAAGTCACTGAGTTGAACCTACAAGGCTCTCAGTTGCATGGACTCATATCTCCACAAGTTGGCAATCTCTCTTTTCTTAGAAACCTCAACCTCGCAAACAACAGCTTCTACGGAAAAATCCCACAGGAGTTGGGTCGATTGTTACGACTACAGCAACTCTCTCTTAGCAATAACACATTGACTGGGGAAATTCCTACAAACTTGACCAGTTGCTCTAATCTCAAAGAGTTACACTTAACTGGGAACAATCTGATTGGCAAAATACCAATTGAAATTGCCTCTCTTCGGAAGCTTCAATATTTTGTTGTTGCAAAGAATAATTTAACCGGAGGAGTCACGCCCTTCATAGGGAATCTATCATCTCTAACTGTTCTCAAGTTGAGTTTTAATAACTTAGAGGGAGATATTCCACAAGAAATATGCCGCCTCAAAAACTTGACAATTATAGTAGTGGCTGTCAACAAATTGAGTGGTATATTTCCTTCTTGTTTTTACAATATGTCATCTCTTACTTTAATCTCAGCTGGAGTGAATCAATTTAATGGCTCTCTTCCATCCAACATGTTCCACACCCTTCCTAATCTCCAATATTTTGCAATTGGCGGGAATCAAATCTCAGGTCCAATCCCCATTTCCGTTGCAAATGCGTCTGTCCTTCAAGCACTTGATATCATTAAAAACCATTTCGTAGGACAAGTTCCAAGTCTAGGGAAGCTAAAAGACATGTATTACCTAGGTTTGTCTGACAACAATCTAGGTGACGATATAACTACGGATTTGGAGTTTTTAAAATCATTGACAAACTGTAGCAAGTTGCAACATTTAGGTATGTCCTACAATAAGTTTGGAGGTCGTTTGCCAAATTGCTTGGGCAATTTATCCTCCCAAATCAATCAACTATATATTGGGGGTAATCAAATATCAGGACAAATTCCTGTAGAATTAGGAAATCTAATTAACTTAATTCTCTTGGGTATGGAAAATAACCGTTTTGAGGGGATTATTCCATCCACTTTTGGAAGGTTTCAAAATATGCAATATTTAAATTTGGGTGGAAACCAGCTGTCAGGAGATATACCATTCATCATAGGCAACCTCAGTTTGTTGTACTTTTTGAATTTAGCCCAAAATTTGTTAAAAGGAAAAATTCCTCTAAGTATTGGAAAGTGTCAAAATTTGCAAGTTCTAGACCTTTCCAGAAACAACCTTAGAGGAACCATACCCTTTGAGGTTTTTAGTCTTTCCTCATTAACAAATTTACTAGACTTGTCGCACAACTCATTGAGTGGTAGTCTACAAGATGAAGTGGGCCAATTGAAAAATATTGATGTGCTAAATGTCTCTAATAATCATCTATCTGGTAATATCCCTGGAACAATTGGAAAATGTTTAAGCTTGGAGTACCTTTATTTGCAGGGGAATTCCTTCCATGGAATCATCCCATCCTCTTTGGCTTCACTAAAAGATCTTCGACAGTTAGACCTATCACGAAATCACTTGTCTGGATCAATTCCTGATGTTTTGCAAAATATTTCTTTCTTGGAATACTTAAATGTATCATTCAACATGTTGGATGGTGAAGTACCAACGGAAGGTATCTTTCGAAATGCAAGTGAATTAGCAGTGACCGGAAACAATAACCTTTGTGGAGGTGTTTCGGAGCTACATCTACCGCTATGCCCAGTCAAAAGTGAGAAACATGAAAAACATCGCAATTTAAGGTTGATAGCAGCGATAATTAGTGTAATTGTTTTTCTTCTCATACTGTCGTTCATTCTCACTTTCCACTGGATGAGGAAAAAAAGCAAGAAATCATCTTCTGATTCACCAACAATTGACCAGCTGGCCAAGGTTTCATACCAAAACCTACACCGTGGAACCGATGGGTTTTCAATAAGAAACTTGATAGGATCCGGAAGTTTTGGCTCTGTATACAAAGGAATTGTTGGGCCCGAAGACACAATTGTTGCCATAAAAGTCTTAAATCTTCAAAAGAAGGGAGCTCACAAGAGTTTCAATGTTGAATGCAATGCACTCAAAAATATTAGGCATCGAAATCTGGTTAAGATTTTAACATGTTGTTCTAGCACAGATTTCGAAGGTCAAGAATTTAAAGCTCTTGTTTTTGAGTACATGACAAATGGAAGCTTAGAAAGATGGTTGCATCCAGCAGCAAATATTGCAGATCAGCATAGATCATTAAACCTTGAGGAGAGGTTAACTATTATTACTGATGTTGCTTCAGCATTTCATTATCTTCACTACGAATGTGAGCAGACTATCATTCACTGTGATTTGAAGCCTGGCAATGTCCTTCTTGATGATTGTATGGTAGCTCACGTGAGTGATTTTGGCCTAGCAAGATTGCTCTCAAGTGTTGGAGTCTCTCTCACACAAAGTAGCACAGTTGGAATAAAGGGGACCATTGGTTATACTCCTCCAGAGTATGGAATGTGTTTTGCGGTGTCCATTGAAGGTGATATGTATAGTTTTGGAATTTTGATTTTAGAAATGTTAACCGGAAGGAGACCTACAGAAGAAATGTTTCAAGATGGTCAAAATCTCCACAATTATGTTGAAATTTCAATTTCAAATCACCTTTTGCATATTGTGGACCCGACTATTCTCCCCTACGAATTAGAACAGGGTACTGGCAATAAGAAACTTGGTCTTATGCATCCTAGTGTAGAGAGATGTTTATTTTCTCTTTTTAGGATTGCACTTGCTTGTTCAATGGAATCACCAAAAGAAAGAATGAGTATGATTGATGTCATTAGGGAGCTTAATCTGATCAAAAGTTTCTTCCCTTCTAGGATTTAG 3075 0.3808 MKPFSLTLPAFCSTCLHLFLLLITLNSLWLGPETTASASGNETDHLALLNFKESISNDPSGILVSWNSSTHFCNWHGITCSHMHQKVTELNLQGSQLHGLISPQVGNLSFLRNLNLANNSFYGKIPQELGRLLRLQQLSLSNNTLTGEIPTNLTSCSNLKELHLTGNNLIGKIPIEIASLRKLQYFVVAKNNLTGGVTPFIGNLSSLTVLKLSFNNLEGDIPQEICRLKNLTIIVVAVNKLSGIFPSCFYNMSSLTLISAGVNQFNGSLPSNMFHTLPNLQYFAIGGNQISGPIPISVANASVLQALDIIKNHFVGQVPSLGKLKDMYYLGLSDNNLGDDITTDLEFLKSLTNCSKLQHLGMSYNKFGGRLPNCLGNLSSQINQLYIGGNQISGQIPVELGNLINLILLGMENNRFEGIIPSTFGRFQNMQYLNLGGNQLSGDIPFIIGNLSLLYFLNLAQNLLKGKIPLSIGKCQNLQVLDLSRNNLRGTIPFEVFSLSSLTNLLDLSHNSLSGSLQDEVGQLKNIDVLNVSNNHLSGNIPGTIGKCLSLEYLYLQGNSFHGIIPSSLASLKDLRQLDLSRNHLSGSIPDVLQNISFLEYLNVSFNMLDGEVPTEGIFRNASELAVTGNNNLCGGVSELHLPLCPVKSEKHEKHRNLRLIAAIISVIVFLLILSFILTFHWMRKKSKKSSSDSPTIDQLAKVSYQNLHRGTDGFSIRNLIGSGSFGSVYKGIVGPEDTIVAIKVLNLQKKGAHKSFNVECNALKNIRHRNLVKILTCCSSTDFEGQEFKALVFEYMTNGSLERWLHPAANIADQHRSLNLEERLTIITDVASAFHYLHYECEQTIIHCDLKPGNVLLDDCMVAHVSDFGLARLLSSVGVSLTQSSTVGIKGTIGYTPPEYGMCFAVSIEGDMYSFGILILEMLTGRRPTEEMFQDGQNLHNYVEISISNHLLHIVDPTILPYELEQGTGNKKLGLMHPSVERCLFSLFRIALACSMESPKERMSMIDVIRELNLIKSFFPSRI 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4108g00040 1024 SUPERFAMILY L domain-like 41 338 - -
Gabi4108g00040 1024 Pfam Leucine Rich repeats (2 copies) 134 174 IPR025875 -
Gabi4108g00040 1024 SUPERFAMILY Protein kinase-like (PK-like) 688 1014 IPR011009 -
Gabi4108g00040 1024 SUPERFAMILY L domain-like 382 635 - -
Gabi4108g00040 1024 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 41 198 - -
Gabi4108g00040 1024 Gene3D Transferase(Phosphotransferase) domain 1 797 1020 - -
Gabi4108g00040 1024 FunFam LRR receptor-like serine/threonine-protein kinase EFR 685 796 - -
Gabi4108g00040 1024 Pfam Leucine Rich Repeat 356 378 IPR001611 GO:0005515
Gabi4108g00040 1024 PANTHER OS04G0122200 PROTEIN 111 227 - -
Gabi4108g00040 1024 Gene3D Phosphorylase Kinase; domain 1 677 796 - -
Gabi4108g00040 1024 Gene3D Ribonuclease Inhibitor 274 348 IPR032675 -
Gabi4108g00040 1024 FunFam LRR receptor-like serine/threonine-protein kinase EFR 343 651 - -
Gabi4108g00040 1024 ProSitePatterns Protein kinases ATP-binding region signature. 721 744 IPR017441 GO:0005524
Gabi4108g00040 1024 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 223 318 - -
Gabi4108g00040 1024 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 797 1023 - -
Gabi4108g00040 1024 PRINTS Leucine-rich repeat signature 478 491 - -
Gabi4108g00040 1024 PRINTS Leucine-rich repeat signature 572 585 - -
Gabi4108g00040 1024 Gene3D Ribonuclease Inhibitor 349 655 IPR032675 -
Gabi4108g00040 1024 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Gabi4108g00040 1024 Pfam Leucine rich repeat 550 609 IPR001611 GO:0005515
Gabi4108g00040 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672|GO:0006468
Gabi4108g00040 1024 Pfam Protein kinase domain 717 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4108g00040 1024 Pfam Leucine Rich repeat 474 490 IPR001611 GO:0005515
Gabi4108g00040 1024 Gene3D Ribonuclease Inhibitor 43 157 IPR032675 -
Gabi4108g00040 1024 SMART serkin_6 715 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4108g00040 1024 ProSiteProfiles Protein kinase domain profile. 715 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4108g00040 1024 Gene3D Ribonuclease Inhibitor 162 273 IPR032675 -
Gabi4108g00040 1024 SMART LRR_typ_2 596 621 IPR003591 -
Gabi4108g00040 1024 SMART LRR_typ_2 403 426 IPR003591 -
Gabi4108g00040 1024 SMART LRR_typ_2 475 499 IPR003591 -
Gabi4108g00040 1024 SMART LRR_typ_2 572 595 IPR003591 -
Gabi4108g00040 1024 SMART LRR_typ_2 132 156 IPR003591 -
Gabi4108g00040 1024 SMART LRR_typ_2 204 228 IPR003591 -
Gabi4108g00040 1024 SMART LRR_typ_2 524 548 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4108g00040 Gabi-Chr4108 393679 396897 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4108g00040 41 1020 Receptor kinase-like Gene Family AT3G47570 45.363 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi4108g00040 Pkinase 7.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4108g00040 - - gmx:100792724 1379.39