Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4108g00033 ATGCCACAGAACTGCATAGCACCAAAACCTGAATACTGCAATAGCCACTCTGTGGAAGGACCACCAGAGATGACCGAGCCCCATAACTCAAGTGTCCTTGCCTACCCCATACGAACCAATGAACAATCTTTCCCAAAACTCACTATGCACCCCATAACTTTGAAGTTTGAGGAATTGGTGTACAAAGTTAAACTAGAGGAGAAAGGAATGTGTTGGGGCAGTACATGGACTTGCAAAGAGAAGACCATATTGAATGGAATCACAGGTGTTGTATGCCCAGGAGAAATTCTTGCTATGCTGGGACCATCAGGTAGTGGCAAAACCACACTTCTCACAGCTCTTGGAGGCCGTCTCAGTGGTAAACTATCTGGAAAGATCACATACAACTCTCAGCCTTTCTCAGGTGCCATAAAAAGAAGAACAGGTTTTGTGGCTCAGGATGATGTGCTATACCCTCATCTGACAGTCACAGAAACACTAGTGTTCACTGCACTTTTAAGGCTTCCCAACAGCTTGACCCGAGATGAAAAAGTTCAGCATGTAGAGAGAGTTATCACTGAGCTAGGACTAACTCGTTGCAGGAGCAGCATGATAGGAGGACCACTTTTCAGAGGAATATCAGGTGGGGAGAAAAAGAGGGTGAGCATAGGTCAAGAAATGCTCATCAATCCAAGCCTTTTGTTGCTAGATGAGCCCACTTCAGGTTTGGATTCCACCACTGCTCAAAGGATCCTAAAAACAATCAAACGCTTGGCTAGTGGTGGTAGAACTGTTGTCACCACCATTCATCAACCCTCAAGTCGCCTCTACTATATGTTTGATAAGGTGGTGTTGCTCTCTGAAGGGTGCCCCATATATTATGGTCCTGCTTCAACTGCCTTAGAGTACTTCTCATCTGTTGGTTTTTCAACATGTGTTACTGTCAATCCAGCTGATCTCTTGCTTGATCTTGCCAACGGGATTGCCCCGGACTCCAAGCATTCAACTGAACAAAGTGAGGGGCTGGAACAAGAGAGGAAGCTGGTGAGAGAATCTCTAATATCTGCTTATGACAAGAACATAGCTACAAGGCTGAAAGCTGAGGTTTGCAGCTTGGAAGTGAACAACTACAACATCACAAAAGATGCTTGCTCAAAGCAATGGAGCACAAGCTGGTGGCATCAGTTCAAGGTACTATTACAGAGGGGAGTGAGGGAGCGAAGGCATGAAGCCTTCAACAGGCTGAGAATATTCCAAGTCATAAGTGTGGCGTTTCTTGGTGGACTCTTGTGGTGGCATACACCAGAGTCACATATTGAAGACCGGGTTGCCTTGCTCTTTTTCTTTTCTGTTTTCTGGGGATTCTACCCTCTCTACAATGCAGTTTTCACATTTCCTCAAGAGAGGAGAATGCTGATCAAGGAACGTTCATCAGGAATGTACCGGCTTTCTTCCTATTTCCTTGCTAGAACAATAGGAGACTTGCCACTGGAGCTTGCACTTCCAACTGCATTTGTCTTCATAATCTATTGGATGGGAGGGCTTAAACCTGATCCTTTGACTTTTATCCTTTCACTTCTTGTGGTTCTTTACAGTGTTCTTGTATCTCAAAGTCTTGGCTTAGCATTTGGTGCTATTTTGATGGAGATTAAACAGGCCACTACTCTAGCTTCTGTCACAACCCTTGTATTTCTCATTGCTGGAGGGTACTATATACAACAGATTCCTCCCTTCATAGCATGGCTCAAGTACTTGAGCTATAGCTACTACTGTTACAAGCTACTTCTCGGTGTTCAGTACAATGATAATGATTATTATGAATGCTCAAACGGGGTGTTGTGCAAGGTTGCAGATTTTCCTCCAATCAAATCAATGGGTTTGAATTATATGTGGGTTGATGTGTCCATTATGGCCTTGATGTTGGTGGGTTATCGACTAGTTGCTTATTTAGCACTGCATAGAGTTAGGTAG 1950 0.4415 MPQNCIAPKPEYCNSHSVEGPPEMTEPHNSSVLAYPIRTNEQSFPKLTMHPITLKFEELVYKVKLEEKGMCWGSTWTCKEKTILNGITGVVCPGEILAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNSQPFSGAIKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPNSLTRDEKVQHVERVITELGLTRCRSSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILKTIKRLASGGRTVVTTIHQPSSRLYYMFDKVVLLSEGCPIYYGPASTALEYFSSVGFSTCVTVNPADLLLDLANGIAPDSKHSTEQSEGLEQERKLVRESLISAYDKNIATRLKAEVCSLEVNNYNITKDACSKQWSTSWWHQFKVLLQRGVRERRHEAFNRLRIFQVISVAFLGGLLWWHTPESHIEDRVALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVFIIYWMGGLKPDPLTFILSLLVVLYSVLVSQSLGLAFGAILMEIKQATTLASVTTLVFLIAGGYYIQQIPPFIAWLKYLSYSYYCYKLLLGVQYNDNDYYECSNGVLCKVADFPPIKSMGLNYMWVDVSIMALMLVGYRLVAYLALHRVR 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4108g00033 649 Gene3D - 73 300 IPR027417 -
Gabi4108g00033 649 Pfam ABC transporter 85 234 IPR003439 GO:0005524
Gabi4108g00033 649 Pfam ABC-2 type transporter 388 593 IPR013525 GO:0016020|GO:0140359
Gabi4108g00033 649 SMART AAA_5 93 283 IPR003593 GO:0016887
Gabi4108g00033 649 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 39 642 - -
Gabi4108g00033 649 ProSitePatterns ABC transporters family signature. 206 220 IPR017871 GO:0005524|GO:0016887
Gabi4108g00033 649 CDD ABCG_EPDR 51 288 - -
Gabi4108g00033 649 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 54 306 IPR003439 GO:0005524
Gabi4108g00033 649 FunFam ABC transporter G family member 22 71 300 - -
Gabi4108g00033 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 298 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4108g00033 Gabi-Chr4108 338826 341932 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4108g00033 83 282 Calmodulin-binding Proteins AT2G36910 29.858 9.05e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4108g00033 K05681 - gmx:100780191 1194.87