Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4108g00013 ATGTCTCCACGGCGATACTTCACCGCCGTCATTAGCATTCTGCTGCTGTTCCCGGAGGCGACAAGACAAGCCCAGATTCTCAAAATAGAAAATCACGTCTTTGGTTACTTCAACTCCTCTAACTCTAACATGTTCAACACTATAGCCTCTGCAACGATCAACAACCTCGGCGCCGGCGCCCTCCAAGTCACGCCGGACAGCAACAACGTCAATCTGACCAACAACTCCGGCAGAGTCCTCTTCAACGAGCGGTTCCAGCTCTGGGACGACGACAACGGTGACTTCAACGGAAAACTAGCTTCCTTCAACACCTCCTACCTCGTCAACGTGTTTCCCGTCAACAACGCTACCCCAGGTGAAGGTCTCGCCTTCGTTATTTCACCTTCTCTTTCGATCCCTCTCAACAGTTACGGTCAGTATCTTGGTCTCACCAACGCCACCACCGACGGTAACGTCACAAACCAATTCGTCGCCGTCGAATTGGACACCGTGAAACAGGACTTTGACCCCGACAACAACCACATCGGACTCGACATCAACAGCGTTCGTCACAAAGTTAGTGTTCCGCTGTCTCCGTTTGGGTTTCAGATCGCTCCCAACGTTCCTAAGTTCTACGCGCTGTGGGTGGAGTACGACGGTGTACGGAAGGTGATTGATGTGTACATGGCGGCGCAGGATGATAAGAACGCTCCCATTGTAGCGAAACCAACGAAGCCTGTGTTGAGTTCGGCTCTTGATCTCAAAAGTTTGGTGAATCAGTGGTCGTATTTTGGGTTCTCTGCTTCAACTGGGACAACCTATGAGTTGAACTGTGTTCTTAGATGGAATATATCTATTGAGGTTTTTCCTCATAAGAGTAAAGATGGGAACTTGTTGAAGATTGGTTTGGGGGTTGGGGCGCCTCTGGTGATTCTTGTTGTGGTTGGTGTTGTTGTGTTGGTTTATTATTATGTAAGCAGGAAAAGAAGGGAAAGTGACTCTGATTCTCATATTGTTGGGACCCTCAAGAGCCTTCCGGGAACACCAAGAGAGTTTAGGTTCCAGGAATTGAAGAAAGCAACAAACAATTTTGATGAAAGGCTCAAACTTGGAGAAGGTGGGTATGGTGTTGTTTATAGAGGAACACTGTTGAAGGAGAAGTTGGAAGTGGCTGTTAAGATGTTCTCGAGGGACAAGATGAAAAGCACTGATGATTTCTTGGCTGAGCTCACCATTATTAATCGTCTCCGTCATAAACACCTTGTTCGGTTACTAGGATGGTGCCATAAAAACGGGGTATTGCTCTTAGTGTATGATTACATGCCTAATGGAAGCTTGGACAAACACATTTTCTGTGAGGAAGGGACAAGCACTACCCCACTGGGTTGGCATCTAAGATACAAGATCATATCAGGGGTGGCTTCTGCATTGAATTACCTACATAACGAGTATGATCAGAAAGTGGTTCACAGAGACCTTAAAGCAAGCAACATCATGCTGGACTCAGACTTCAATGCACGTTTAGGTGACTTTGGTTTGGCACGTGCATTGGAGAATGAGAGAACATCATACGCAGAGTTGGAAGGAGTGCATGGCACCATGGGATACATAGCACCAGAATGCTTTCACACAGGCAAGGCCACACGTGAGTCAGATGTTTATGGATTCGGGGCTGTCCTACTAGAGGTTGTGTGTGGTCAAAAGCCATGGACAAAGATTGAGGGGTATCAGTTTTTGGTGGATTGGGTGTGGCACTTGCATCGTGAAGGAAGGATACTAGAGGCAGTGGACCCTAGACTTGGGAATGACCCTAGACTTGGGAATGACTATGTGGTTGAAGAGGCAGAGAGGATATTGAAATTAGGACTTGCATGCTCTCATCCTATTGCATGTGAGAGACCAAAAATGCAAAACATTGTTCAAATCATATCTGGGTCAGTGAATGTGCCTCATGTGCCACCATTCAAACCATCTTTTGTGTGGCCAGCTATGGATCTAGAAAGCGTTGCAATTGACATATCAGGAACAACCACTTCTCAATACACATCCATTACCAGTGGTGGAACCACATTGGGGCTAGCTCGTGTCAAGGCACCAGCTAGTTTTCAAACTTGTTAG 2097 0.4683 MSPRRYFTAVISILLLFPEATRQAQILKIENHVFGYFNSSNSNMFNTIASATINNLGAGALQVTPDSNNVNLTNNSGRVLFNERFQLWDDDNGDFNGKLASFNTSYLVNVFPVNNATPGEGLAFVISPSLSIPLNSYGQYLGLTNATTDGNVTNQFVAVELDTVKQDFDPDNNHIGLDINSVRHKVSVPLSPFGFQIAPNVPKFYALWVEYDGVRKVIDVYMAAQDDKNAPIVAKPTKPVLSSALDLKSLVNQWSYFGFSASTGTTYELNCVLRWNISIEVFPHKSKDGNLLKIGLGVGAPLVILVVVGVVVLVYYYVSRKRRESDSDSHIVGTLKSLPGTPREFRFQELKKATNNFDERLKLGEGGYGVVYRGTLLKEKLEVAVKMFSRDKMKSTDDFLAELTIINRLRHKHLVRLLGWCHKNGVLLLVYDYMPNGSLDKHIFCEEGTSTTPLGWHLRYKIISGVASALNYLHNEYDQKVVHRDLKASNIMLDSDFNARLGDFGLARALENERTSYAELEGVHGTMGYIAPECFHTGKATRESDVYGFGAVLLEVVCGQKPWTKIEGYQFLVDWVWHLHREGRILEAVDPRLGNDPRLGNDYVVEEAERILKLGLACSHPIACERPKMQNIVQIISGSVNVPHVPPFKPSFVWPAMDLESVAIDISGTTTSQYTSITSGGTTLGLARVKAPASFQTC 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4108g00013 698 ProSitePatterns Legume lectins beta-chain signature. 157 163 IPR019825 -
Gabi4108g00013 698 Pfam Protein kinase domain 360 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4108g00013 698 FunFam probable L-type lectin-domain containing receptor kinase S.5 434 641 - -
Gabi4108g00013 698 Gene3D Phosphorylase Kinase; domain 1 342 433 - -
Gabi4108g00013 698 ProSiteProfiles Protein kinase domain profile. 357 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4108g00013 698 Gene3D - 31 293 - -
Gabi4108g00013 698 Gene3D Transferase(Phosphotransferase) domain 1 434 642 - -
Gabi4108g00013 698 CDD lectin_legume_LecRK_Arcelin_ConA 31 276 IPR001220 GO:0030246
Gabi4108g00013 698 PANTHER - 54 646 - -
Gabi4108g00013 698 SUPERFAMILY Protein kinase-like (PK-like) 339 669 IPR011009 -
Gabi4108g00013 698 CDD STKc_IRAK 363 636 - -
Gabi4108g00013 698 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 282 IPR013320 -
Gabi4108g00013 698 SMART serkin_6 357 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4108g00013 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Gabi4108g00013 698 ProSitePatterns Protein kinases ATP-binding region signature. 363 386 IPR017441 GO:0005524
Gabi4108g00013 698 Pfam Legume lectin domain 34 285 IPR001220 GO:0030246
Gabi4108g00013 698 FunFam probable L-type lectin-domain containing receptor kinase S.5 342 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4108g00013 Gabi-Chr4108 195357 198923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4108g00013 59 651 Receptor kinase-like Gene Family AT3G53810 38.684 4.30e-128 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi4108g00013 Pkinase 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4108g00013 - - gmx:100784558 977.622