Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4108g00012 ATGGCTCCCAGGCGTTACCTCACCGCTATCATCAGCATTCTGCTGCTGTTCCCGGCGGCGACAAGCCAAGCCCAGATTCTCAAAATAGAAAATCACGTTTTCGGTCCCTTCAACCTCTCTTACTCTGACATCTTCGACATGATACCCTCGTCGGCGATCAACTTCGGCGCCCTCCAAGTCACGCCGGACAGCGCCGGCAACGTCAATCTGACCAACAACTCCGGCAGAGTCCTCTTCAACGAGCTGTTCCAGCTCTGGGACGACGACAACGGTGACTTCAACGGAAAACTCGCTTCCTTCAACACCTCCTTCCTCGTCAACGTGTTTCGCGTCAACAACGCTACCCCAGGTGAAGGACTCGCCTTCCTTATTTCACCTTCTCCTTCGATCCCTCTCAACAGTTACGGTCAGTATCTCGGTCTCACCAACGCCACCACCGACGGCAACGTCACTAACCAATTCGTCGCCGTCGAGTTAGACACCGTGAAACAGGACTTTGACCCGGATAACAACCACATCGGACTCGACATCAACAGCGTTCGTCACAACGTTAGTGTTCCTCTGTCTCCGTTTGGGTTTCAGATCTCTCCCAACGGTACTCAGTTCTACGCGCTGTGGGTGGAGTACGACGGTGTACGGAAGGTGATTGATGTGTACATGGCGGCGCAGGATGATAAGGACGCTCCCATTGTAGCGAAACCAACGAAGCCTGTGTTGAGTTCGGGTCTTGATCTCAAAGGTTTGGTGAATCAGTGGTCGTATTTTGGGTTCTCTGCTTCAACTGGGACAACCTATGAGTTGAACTGTGTTCTTAGATGGAATATATCGATTGAGGTTTTTCCTCATAAGAGTAAAGATGGGAACTTGTTGAAGATTGGTTTGGGGGTTGGGGTGCCTCTGGTGATTCTTGTTGTGGTTGGTGTTGGTGTGTTGGTTTATTATTATGTAAGCAGGAAAAGAAGGGAAAGTGATTCTGATTCTCATATTGTTGGGACCCTCAAGAGCCTTCCCGGAACACCAAGAGAGTTTAGGTTCCAGGAACTGAAGAAAGCAACAAACAATTTTGATGAAAGGCTCAAACTTGGAGAAGGTGGGTATGGTGTTGTTTATAGAGGAACGCTGTTGAAGGAGAAGTTGGAAGTGGCTGTTAAGATGTTCTCGAGGGACAAGATGAAAAGCACTGATGATTTCTTGTCTGAGCTCACCATTATTAATCGTCTTCGTCACAAACACCTTGTTCGGTTACTAGGATGGTGCCACCAAAACGGGGTATTGCTCTTAGTGTATGAGTACATGCCTAATGGAAGCTTGGACAACCACATTTTTTGTGAGGAAGGTACAAGCACTACCCCACTAGGTTGGCATCTAAGATACAAGATCATATCAGGGGTGGCTTTTGCATTGAATTACCTACATAATGAGTATGATCAGACAGTGGTTCATAGAGACCTCAAGGCCAGCAACATCATGCTAGACTCAGACTTCAATGCTCGTTTAGGTGACTTTGGCTTGGCACGTGCATTGGAGAATGAGAAAACATCATATGCAGAGTTGGAAGGAGTGCATGGCACCATGGGATACATAGCACCAGAATGCTTTCACACAGGCAAGGCCACACGTGAGTCAGATGTTTATGGATTTGGGGCTGTCCTACTAGAGGTTGTGTGTGGTCAAAGGCCATGGACAAAGATTGAGGGGTATCAGTTTTTGGTGGATTGGGTGTGGCACTTGCATCGTGAAGGTAGGATACTAGAGGCAGTGGACTCTAGACTTGATAATGACTATGTGGGTGAAGAGGCAGAGAGGATGTTGAAATTAGGACTTGCATGCTCTCATCCTATTGCAGGTGAGAGACCAAAAATGCAAAACATTGTTCAAATCATATCTGGGTCAGTGAATGTGCCTCATGTGCCACCATTCAAACCATCTTTTGTGTGGCCTGCTGTGGATCTAGCAAGCCTTGCAAGTGACATATCAGGAACAACCACTTCTCAATACACACCCATTACCACTAATACACTATCTTCTTCTTTGCATGTTGAATTCTCAGATACCAGCTCTCTGGTCTAG 2070 0.4734 MAPRRYLTAIISILLLFPAATSQAQILKIENHVFGPFNLSYSDIFDMIPSSAINFGALQVTPDSAGNVNLTNNSGRVLFNELFQLWDDDNGDFNGKLASFNTSFLVNVFRVNNATPGEGLAFLISPSPSIPLNSYGQYLGLTNATTDGNVTNQFVAVELDTVKQDFDPDNNHIGLDINSVRHNVSVPLSPFGFQISPNGTQFYALWVEYDGVRKVIDVYMAAQDDKDAPIVAKPTKPVLSSGLDLKGLVNQWSYFGFSASTGTTYELNCVLRWNISIEVFPHKSKDGNLLKIGLGVGVPLVILVVVGVGVLVYYYVSRKRRESDSDSHIVGTLKSLPGTPREFRFQELKKATNNFDERLKLGEGGYGVVYRGTLLKEKLEVAVKMFSRDKMKSTDDFLSELTIINRLRHKHLVRLLGWCHQNGVLLLVYEYMPNGSLDNHIFCEEGTSTTPLGWHLRYKIISGVAFALNYLHNEYDQTVVHRDLKASNIMLDSDFNARLGDFGLARALENEKTSYAELEGVHGTMGYIAPECFHTGKATRESDVYGFGAVLLEVVCGQRPWTKIEGYQFLVDWVWHLHREGRILEAVDSRLDNDYVGEEAERMLKLGLACSHPIAGERPKMQNIVQIISGSVNVPHVPPFKPSFVWPAVDLASLASDISGTTTSQYTPITTNTLSSSLHVEFSDTSSLV 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4108g00012 689 PANTHER - 60 638 - -
Gabi4108g00012 689 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
Gabi4108g00012 689 SUPERFAMILY Protein kinase-like (PK-like) 337 654 IPR011009 -
Gabi4108g00012 689 ProSiteProfiles Protein kinase domain profile. 355 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4108g00012 689 CDD lectin_legume_LecRK_Arcelin_ConA 31 274 IPR001220 GO:0030246
Gabi4108g00012 689 Pfam Protein kinase domain 358 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4108g00012 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Gabi4108g00012 689 FunFam probable L-type lectin-domain containing receptor kinase S.5 340 431 - -
Gabi4108g00012 689 Gene3D - 32 291 - -
Gabi4108g00012 689 FunFam probable L-type lectin-domain containing receptor kinase S.5 432 633 - -
Gabi4108g00012 689 CDD STKc_IRAK 361 628 - -
Gabi4108g00012 689 ProSitePatterns Legume lectins beta-chain signature. 155 161 IPR019825 -
Gabi4108g00012 689 SMART serkin_6 355 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4108g00012 689 Gene3D Phosphorylase Kinase; domain 1 340 431 - -
Gabi4108g00012 689 Gene3D Transferase(Phosphotransferase) domain 1 432 634 - -
Gabi4108g00012 689 SUPERFAMILY Concanavalin A-like lectins/glucanases 45 282 IPR013320 -
Gabi4108g00012 689 Pfam Legume lectin domain 49 283 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4108g00012 Gabi-Chr4108 183880 186997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4108g00012 73 644 Receptor kinase-like Gene Family AT5G55830 38.588 1.20e-124 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi4108g00012 Pkinase 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4108g00012 - - gmx:100780014 1014.6