Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4108g00007 ATGGAGTTTGAACCTCTGAGTCTAAGCAACGAGATCATTGAATTTGATATGATTGGTTTGGGGGATGATGCTGCTATTGATATTGAGCATGCTGTGGAAGAAGATGATGACCTTGTTAATGTTGACAATGGTCCTGCTGCTGTTACTTCTATTACCAGTTTAGCTGCTACTACGGGACCTCACATCCCTGGAGGGGACACAAATCTTGAACCTTATCAGGGTATGGAATTTGAATCAGAAGAGGCTGCTAAGGCCTTTTATAATTCCTATGCACGCCGTGTTGGCTTCAGTACACGGGTGAGCATGTCTCGCCGCTCCAGGCGTGATGGTGCTATAATTCAGAGGTCTTTTGTGTGTGCCAAGGAAGGTTTTCGTGTGGAGAAAGAGAGGAATTCTCTAGATGGAAGAATCAAGCGGCCTCGTGCCGAAACCCGTGTTGGTTGCAAGGCCATGTTGGTTGTGAAAATTCAAGATTCTGGCAGATGGGTTGTTTCTTCCTTTGTCAAGGAACACAACCATGAATTGGTTCCACCTGACAAGGTGCATTGCCTTCGCTCTCACCGCCATGTTTCAGGTCCAGCTAAGTCGTTGATTGATACTTTGCAGGGTGCTGGCATAGGGCCCAGCGGAATTATGTCTGCTCTTATCAAAGAATATGGTGGAATTAGCAATATTGGTTTCACTGAGCGTGACTGTAGGAATTATATGAGGAGCAGTAGACAAAGGACCCTTGGAGGTGATACTCAAATCCTCTTGGATTATTTGAAGAGCAAACAAGCAGAGAATCCCTCATTTTTCTATGCTGTGCAGGGTGATGAAGATCATTGCATGAGTAATATCTTCTGGGTTGATCCTAAGGCCAGGACTAACTACACTTACTTTGGTGACACTGTCACCTTTGACACAACATATAGGTCTAACCGCTATAGATTGCCTTTTGCACCTTTCACTGGAGTTAATCATCATGGACAGCCTGTATTATTTGGTTGTGCTCTCTTGATAAATGAATCCGAGGCATCTTTTGTATGGCTGTTCAAAACCTGGCTTGAAGCAATGTCAGGGCAACATCCAGTTTCAATTACTACTGATCATGATAGGGTGATTCGCGTAGCCATCAACAATGTCTTTCCTGATACCCGTCACCGATTTTGCAAGTGGCACATTTTTAAAGAATGCCAAGAGAAGTTGTCTCATGTACTTTCTGAACACCATGATTTTGAAGCTAACCTCCATAAATGTGTTAACCTGACAGAGTCTATTGAGGAGTTTGAGTCTTGTTGGTCCTCTCTAATTGATAGGTATGATCTTAGAGAACATGAATGGCTCCAAGCAATTTATGGTGATAGGAGGCAGTGGGTTCCAGTGTACTTGAGGGACACATTTTTTGCAGAAATGTCAATAACACAACGAAGTGATAGCATAAACTCTTACTTTGACGGATATATTAATGCATCAACGACACTTCAGCTTTTTGTTAAGCAGTATGAGAAGGCTCTGGAAAGCCGTTTTGAGAAAGAAGTCAAAGCTGATTATGACACAATAAACACTGCCCCAGTTCTGAAGACTCCATCACCTATGGAGAAACAGGCAGCTGGAGTTTACACAAGGAGATTGTTCACCAAATTTCAAGAAGAGTTGTTTGAGACATTAACTTTCTTGGCAAACAAAGTAGATGAAGAAGAAATGATTCCTGTGTATAGGGTAGCCAAATATGGGGAAATTCATAGGGCCTACTTTGTCAGATTTAACATTTTCGAGATGAAAGCTACTTGTAGTTGCCAGATGTTTGAGTTTTCTGGTCTAGTTTGTAGACATATATTGACTGTTTTTAGGGTGACAAATATTCTTACACTGCCACCTCATTATATTTTAAAAAGATGGAGCAGGAATGCTAAGAGTGGTGTCATGTTGGATGAACGTACTACTGATTTGTTAAATGGTGCACAAGAATCTATAACTATCCGATACAATAATCTTCGTCATGAGGCCCTTAAGTATGTTGATGAGGGAGTAAACTCTCCAAAAGTTTATGATGTGGCTATGACTGCTCTTCAGGAGGCTGCAAATAAAGTGGTACTTGCAACAAAAAATGGTGGAAGACTGGTTATTTTGAATGGAACTTGTAAAGATGACCTTCATCAGAGCAACGAAGCAACTACAAGTCGCAGTGATCATCAATTTGGTTCAGAACAATCTTCATCTAAGGATGACCAGGACAGAACAATTGAGAAGTTGACACGTCAACTTGACCGAGCTCGAAGGAAGTGTGAAGTTTATAGGTCCAACTTGCTGTTAATTTTAAAAGACATTGAAGAGCAGAATCTAGAATTATCAGTTAAAGTTCAAAATATCAAGTTAGGTATGAAAGATTGA 2373 0.4113 MEFEPLSLSNEIIEFDMIGLGDDAAIDIEHAVEEDDDLVNVDNGPAAVTSITSLAATTGPHIPGGDTNLEPYQGMEFESEEAAKAFYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRVEKERNSLDGRIKRPRAETRVGCKAMLVVKIQDSGRWVVSSFVKEHNHELVPPDKVHCLRSHRHVSGPAKSLIDTLQGAGIGPSGIMSALIKEYGGISNIGFTERDCRNYMRSSRQRTLGGDTQILLDYLKSKQAENPSFFYAVQGDEDHCMSNIFWVDPKARTNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCALLINESEASFVWLFKTWLEAMSGQHPVSITTDHDRVIRVAINNVFPDTRHRFCKWHIFKECQEKLSHVLSEHHDFEANLHKCVNLTESIEEFESCWSSLIDRYDLREHEWLQAIYGDRRQWVPVYLRDTFFAEMSITQRSDSINSYFDGYINASTTLQLFVKQYEKALESRFEKEVKADYDTINTAPVLKTPSPMEKQAAGVYTRRLFTKFQEELFETLTFLANKVDEEEMIPVYRVAKYGEIHRAYFVRFNIFEMKATCSCQMFEFSGLVCRHILTVFRVTNILTLPPHYILKRWSRNAKSGVMLDERTTDLLNGAQESITIRYNNLRHEALKYVDEGVNSPKVYDVAMTALQEAANKVVLATKNGGRLVILNGTCKDDLHQSNEATTSRSDHQFGSEQSSSKDDQDRTIEKLTRQLDRARRKCEVYRSNLLLILKDIEEQNLELSVKVQNIKLGMKD 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4108g00007 790 Pfam SWIM zinc finger 586 612 IPR007527 GO:0008270
Gabi4108g00007 790 MobiDBLite consensus disorder prediction 713 728 - -
Gabi4108g00007 790 Coils Coil 735 762 - -
Gabi4108g00007 790 MobiDBLite consensus disorder prediction 713 741 - -
Gabi4108g00007 790 SMART 26again6 589 616 IPR006564 GO:0008270
Gabi4108g00007 790 Pfam MULE transposase domain 298 390 IPR018289 -
Gabi4108g00007 790 Pfam FAR1 DNA-binding domain 86 177 IPR004330 -
Gabi4108g00007 790 ProSiteProfiles Zinc finger SWIM-type profile. 578 614 IPR007527 GO:0008270
Gabi4108g00007 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 63 692 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4108g00007 Gabi-Chr4108 105018 110844 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi4108g00007 MULE 5.4e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4108g00007 - - gmx:100782414 1416.36