Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4108g00005 ATGAATGATGCAAAAGAAAACCAGGAAGTTGGCCAGGGCGTGCCCTTGGCTGTGGAAGAAAACCAGCAGGTGGTTGATGCACAGGTTCAAATGAAACCTGAAGCTGCTTCTGCTCCTGTTTCAGTAGAGGAAACTTCAAATCATGGTGAAAATGGGAAGGCAGAGCAACCTGCTGAGGATAAAAATGTGAAATTTGAGGCTGCTTCAGAAGGCATTCCGCAACAAGATGTTGAAAATGGGAAGGAAGAGCAACCTGCTGAGGATAAAAATGTGAAACTTGAGGTTGCTTCCGAAGGCATTCCGCAACAGGATGCTCAGAGTATCCTTCACTCGGTCCCGGTAGAGGCTGATGCTGGGATTTTGAATAGAATGGAGTGTGGAGAAGCTTCTGATGGGAAGACGGAAGTTGAAGAATTTCCTGAGAGTAATAAGGGCGTTGAGAATGATGATAATGTTCGTCAAGATAGTGTTAATGATGCTGAAACAGCAGTGGAGGAGAAGCCTGAAGCTTGCGGAGTGGCTGATAGTAAAACATGCGATAATGGTGACCACATACCCTCAAGTCATAATGGGCCTGCTGAAAATAAAAATTGTAATAATGGTGACCTTATACCCTCAAGTCATAATGAGCCTACTACACCGCAACCTGCCCCTGCTGATACAAAAACTGAAATTAAGAATGTGTTAGAAGTTGAGAGTAAGGCTGATGAAAAGCAAGCTGCTGAGCATGTAGATAATGGGAATTCAAACTCAAAGCACATGTTTTTCTTGGATCCTGACCATTGTTATGATGGTAATGAGTCAGGAACGGATGAGGAGCAATCAGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAGTTTTACGGAGAAGGGCTTAATTGCCTTAAGTTATGGAGAGCTGTAACAAGATTGGGTGGCTATGATAAGGTAACCTCATGTAAGTTATGGCGGCAAGTGGGGGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCATGGACTTTTAGGGGATTTTATGAGAAGGCACTTCTTGATTATGAAAGGCATAAAATAAAAGGTGGTGAGCTGAATGTGCCTATTGCTCCTCAACCAGAGCCTGTTAATGTTGAAAATCAGGCTTCAGCATCAGGCAGAGCCCGAAGAGATGCTGCAGCGCGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTAGGCAATGGGGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCCGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAACATCAATTTACTTAAACGTAAGAAACCATCTTACATGGATAATGCAGTCAAAGCGGCACGCAGTAAACCATCTAAACCACAATTGGACACAGCTGTGGTCGATATTGGACCTCCTGCTGATTGGGTAAAAGTCAATGTGCAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGTCTTCTGCGGGAAGAGGTCCGTGTTCAATCAGACCCTGCGGGTCGCTTGGTTATAAGTGGTGAGCCTGAGCATCCGAATAATCCTTGGGGTGTGACACCATTCAAAAAGGTTGTCAGCTTGCCCTCAAGGATTGATCCTCATCAGACATCTGCTGTGGTGACACTGCATGGGCAGTTGTTTGTTCGTGTTCCATTTGAACAATCAGAATAG 1698 0.4423 MNDAKENQEVGQGVPLAVEENQQVVDAQVQMKPEAASAPVSVEETSNHGENGKAEQPAEDKNVKFEAASEGIPQQDVENGKEEQPAEDKNVKLEVASEGIPQQDAQSILHSVPVEADAGILNRMECGEASDGKTEVEEFPESNKGVENDDNVRQDSVNDAETAVEEKPEACGVADSKTCDNGDHIPSSHNGPAENKNCNNGDLIPSSHNEPTTPQPAPADTKTEIKNVLEVESKADEKQAAEHVDNGNSNSKHMFFLDPDHCYDGNESGTDEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPIAPQPEPVNVENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSVSVQKREKQLKNINLLKRKKPSYMDNAVKAARSKPSKPQLDTAVVDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4108g00005 565 ProSiteProfiles ARID domain profile. 271 362 IPR001606 GO:0003677
Gabi4108g00005 565 MobiDBLite consensus disorder prediction 48 66 - -
Gabi4108g00005 565 SMART ARID_2 268 358 - -
Gabi4108g00005 565 Pfam ARID/BRIGHT DNA binding domain 274 358 IPR001606 GO:0003677
Gabi4108g00005 565 SMART bright_3 272 363 IPR001606 GO:0003677
Gabi4108g00005 565 MobiDBLite consensus disorder prediction 76 94 - -
Gabi4108g00005 565 Gene3D - 271 368 IPR036431 GO:0003677
Gabi4108g00005 565 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 88 564 IPR045147 GO:0006357
Gabi4108g00005 565 MobiDBLite consensus disorder prediction 127 220 - -
Gabi4108g00005 565 CDD ARID 273 358 - -
Gabi4108g00005 565 MobiDBLite consensus disorder prediction 1 108 - -
Gabi4108g00005 565 Gene3D - 464 565 IPR008978 -
Gabi4108g00005 565 FunFam AT-rich interactive domain-containing protein 3 271 370 - -
Gabi4108g00005 565 MobiDBLite consensus disorder prediction 128 173 - -
Gabi4108g00005 565 FunFam AT-rich interactive domain-containing protein 3 457 565 - -
Gabi4108g00005 565 SUPERFAMILY ARID-like 265 371 IPR036431 GO:0003677
Gabi4108g00005 565 MobiDBLite consensus disorder prediction 181 220 - -
Gabi4108g00005 565 SUPERFAMILY HSP20-like chaperones 474 561 IPR008978 -
Gabi4108g00005 565 Pfam Hsp20/alpha crystallin family 482 564 IPR002068 -
Gabi4108g00005 565 CDD ACD_sHsps-like 480 560 - -
Gabi4108g00005 565 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 465 565 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4108g00005 Gabi-Chr4108 68697 77622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4108g00005 243 563 ARID Transcription Factor Family AT1G76510 61.043 3.11e-131 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gabi4108g00005 HSP20 1.7e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4108g00005 - - gmx:100791081 855.514