Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4107g00001 ATGGGGAGAGCTCCGTGCTGTGCGAAAATGGGGTTGAAGAAAGGGCCATGGAGTTTAGAAGAAGATCAGATTCTCATCAATTACATCAACACATATGGCCATGCCAATTGGCGTGCTCTTCCTAAACATGCTGGGCTGTTAAGGTGTGGAAAGAGTTGCAGACTTCGGTGGACAAATTATCTGAGGCCGGACATCAAACGGGGCAACTTTACCAAAGAAGAAGAGGACTCAATAATCAATTTTCATGAAATGTTGGGAAACAGATGGTCAGCTATTGCAGCCAGGTTACCAGGACGAACAGATAACGAGATTAAAAATGTGTGGCATACCCACTTGAAGAAGAGGCTGCCACAAAACCAACAGTGCAATGTTTCAAAACAAGATAAAGAAGAAATAATGAAGTTGGATTTGGACGCCACCAAATCCAACCAAGACGCCAAACAAGAACAAGACCCGGTGAATTCTCCTCAATGTTCTAGTGACGTGTCCTCATTCACCACTAGTGACAACAACGAGAATAATTGTAGCATTACTACCAGTAATACTACTAATGATCATGACATGTCTATTGATATTAATAATGTTGATTCGCCGGAGAATGATCTTGCATTGGATGATGATTTCTGGTCGGAAGTGTTGTCAAGTGATAATTCCGATGACACAAGCGGTTTTCCGGCCATTGGTGATGACTATCAGATTCAAATTCCATTCTCTCCAACAGTGACCGAAGAAGGGGTCCTTAGTGCTAGTTCGTTAAGTATGTGCGATAACATGGACTTTTGGTACGATGTTTACACAAGAGCTGAGGAATTAACAGGGTTACTGGAATTGTAA 834 0.4221 MGRAPCCAKMGLKKGPWSLEEDQILINYINTYGHANWRALPKHAGLLRCGKSCRLRWTNYLRPDIKRGNFTKEEEDSIINFHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQNQQCNVSKQDKEEIMKLDLDATKSNQDAKQEQDPVNSPQCSSDVSSFTTSDNNENNCSITTSNTTNDHDMSIDINNVDSPENDLALDDDFWSEVLSSDNSDDTSGFPAIGDDYQIQIPFSPTVTEEGVLSASSLSMCDNMDFWYDVYTRAEELTGLLEL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4107g00001 277 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi4107g00001 277 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi4107g00001 277 CDD SANT 69 112 IPR001005 -
Gabi4107g00001 277 CDD SANT 16 61 IPR001005 -
Gabi4107g00001 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi4107g00001 277 MobiDBLite consensus disorder prediction 141 186 - -
Gabi4107g00001 277 FunFam MYB-related transcription factor 13 66 - -
Gabi4107g00001 277 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Gabi4107g00001 277 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 221 - -
Gabi4107g00001 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi4107g00001 277 Gene3D - 11 67 - -
Gabi4107g00001 277 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi4107g00001 277 FunFam Transcription factor MYB15 68 152 - -
Gabi4107g00001 277 Gene3D - 69 151 - -
Gabi4107g00001 277 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi4107g00001 277 MobiDBLite consensus disorder prediction 146 186 - -
Gabi4107g00001 277 SMART sant 66 114 IPR001005 -
Gabi4107g00001 277 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4107g00001 Gabi-Chr4107 6620 8380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4107g00001 1 277 MYB Transcription Factor Family AT2G31180 49.822 3.59e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4107g00001 Myb_DNA-binding 5.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4107g00001 K09422 - gmx:100802214 380.948