Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4106g00004 ATGGCTGTTGCCAAGGGCAACAGCAGCGGTGAACCTTCAACTTCATACAATTGTTACAAAGTAGCAAGCTTGACTGAAACCATATTAGATACAAAGCAAACCTCTAATTTGAAAGATCGGTACATTCTTGGGGAGCAGTTGGGTTGGGGTCAGTTTGGCGTCATAAGAGAATGCTCTGACAAGCTGACCGGAGAGGTTTTGGCCTGCAAATCAATTGCTAAAGATAGGTTGGTTACCTCAGATGATCTGCAGAGTGTTAAACTTGAGATTGAGATAATGGCTAGGTTATCTGGGCACCCAAATGTTGTGGATCTCAAGGCAGTTTATGAAGAGGAAGATTTTGTTCATTTGGTGATGGAGCTTTGTGCTGGAGGGGAGCTGTTTCACAGGTTAGAGAAGCATGGGCGGTTTTCTGAATCTCAAGCCAGGGTTCTCTTTAGGCATCTCATGCAGATGGTTTTGTACTGTCATGAAAATGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTAGCAACTAGATCCTCGTCATCTCCAATTAAATTGGCAGACTTTGGGCTTGCAACCTACATCAAGCCTGGACAAAGTTTACATGGGTTAGTTGGGAGTCCGTTCTATATAGCTCCAGAAGTACTGGCAGGTGCATATAACCAGGCTGCTGATGTTTGGAGTGCAGGGGTTATTCTTTACATTCTACTGAGTGGGATGCCTCCATTTTGGGGAAAGACAAAATCACGCATATTTGAAGCTGTTAAGGCTGCTGACCTGAGGTTCCCATCTGAACCTTGGGAACGCATTTCCGAATCAGCTAAAGATTTGATTAGGGGAATGCTCTGCACTGAACCTTCTCAAAGGCTCACTGCCCAGGAGGTTTTGGATCATTGCTGGATGGAAAGCAATCAAACAAATTCCGAACAACTAAATGAACATAAAATCAGAAGTTGTGGAGAATGGGATGTTGGTGGAAACTCATTCTCTGCCTCGTTTATGTCCAGGAATCAGGACATCAGCTTCGGTGCTGGATCACCTACATGTGATGCCCAATCACCTACATGTGATGCCCAATCACCTACATTCACATGCAGATCATCATTTTCTTCCTTTTTGGTGGAACCAGTGACACCATGTGCTGTTTCTGGTGGGTTTTCATTTCAGAGCTCAGGTGGTTCCTCTGGTTTGGAATTTTCTTCTCCTGTTACCACAATGCCTAGCTTTGCATTTCTCAGCCCCAGTTCTGTTGTTGAACAAAGGAGTCATATATTAGAGTTCTCAACTAACACATCAGATGGAAATGCAATTACTGGAGAGTCTCCCCTTTGCTTTGGCCATGATGTTAAAGAAATGGATTGCAAGCCTGTGGAGGCTAAAAGGGCAGGTGGAACAAATTGGCATAGTGCATTGGGATTCCACAGCAAGAGAAACCGGACAATTGGACTTGGTGAGCGTGATCAACTTGATCTTGTGGTGACTGAATCAGTCATTCGTTGGTCATCATGCACACAACTTCCTACATCACCGAGATCATCTCTTGTCTGTTGA 1545 0.4427 MAVAKGNSSGEPSTSYNCYKVASLTETILDTKQTSNLKDRYILGEQLGWGQFGVIRECSDKLTGEVLACKSIAKDRLVTSDDLQSVKLEIEIMARLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHRLEKHGRFSESQARVLFRHLMQMVLYCHENGVVHRDLKPENILLATRSSSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGAYNQAADVWSAGVILYILLSGMPPFWGKTKSRIFEAVKAADLRFPSEPWERISESAKDLIRGMLCTEPSQRLTAQEVLDHCWMESNQTNSEQLNEHKIRSCGEWDVGGNSFSASFMSRNQDISFGAGSPTCDAQSPTCDAQSPTFTCRSSFSSFLVEPVTPCAVSGGFSFQSSGGSSGLEFSSPVTTMPSFAFLSPSSVVEQRSHILEFSTNTSDGNAITGESPLCFGHDVKEMDCKPVEAKRAGGTNWHSALGFHSKRNRTIGLGERDQLDLVVTESVIRWSSCTQLPTSPRSSLVC 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4106g00004 514 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Gabi4106g00004 514 FunFam Calcium-dependent protein kinase 1 43 126 - -
Gabi4106g00004 514 Gene3D Transferase(Phosphotransferase) domain 1 128 322 - -
Gabi4106g00004 514 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Gabi4106g00004 514 CDD STKc_CAMK 40 298 - -
Gabi4106g00004 514 SUPERFAMILY Protein kinase-like (PK-like) 38 366 IPR011009 -
Gabi4106g00004 514 FunFam Phosphoenolpyruvate carboxylase kinase 128 315 - -
Gabi4106g00004 514 Pfam Protein kinase domain 43 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4106g00004 514 SMART serkin_6 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4106g00004 514 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 312 - -
Gabi4106g00004 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Gabi4106g00004 514 ProSiteProfiles Protein kinase domain profile. 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4106g00004 Gabi-Chr4106 58266 61968 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4106g00004 24 304 EF-hand Containing Proteins AT3G57530 48.399 5.35e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi4106g00004 Pkinase 3.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4106g00004 - - gmx:100776088 833.943