Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4106g00003 ATGGCTGTTGCCAAGGGCAACAGCAGCGGTGAACCTTCAACTTCATACAATTGTTACAAAGTAGCAAGCTTGACTGAAACCATATTAGATACAAAGCAAACCTCTAATTTGAAAGATCGGTACATTCTTGGGGAGCAGTTGGGTTGGGGTCAGTTTGGCGTCATAAGAGAATGCTCTGACAAGCTGACCGGAGAGGTTTTGGCCTGCAAATCAATTGCTAAAGATAGGTTGGTTACCTCAGATGATCTGCAGAGTGTTAAACTTGAGATTGAGATAATGGCTAGGTTATCTGGGCACCCAAATGTTGTGGATCTCAAGGCAGTTTATGAAGAGGAAGATTTTGTTCATTTGGTGATGGAGCTTTGTGCTGGAGGGGAGCTGTTTCACAGGTTAGAGAAGCATGGGCGGTTTTCTGAATCTCAAGCCAGGGTTCTCTTTAGGCATCTCATGCAGATGGTTTTGTACTGTCATGAAAATGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTAGCAACTAGATCCTCGTCATCTCCAATTAAATTGGCAGACTTTGGGCTTGCAACCTACATCAAGCCTGGGGTTATTCTTTACATTCTACTGAGTGGGATGCCTCCATTTTGGGGAAAGACAAAATCACGCATATTTGAAGCTGTTAAGGCTGCTGACCTGAGGTTCCCATCTGAACCTTGGGAACGCATTTCCGAATCAGCTAAAGATTTGATTAGGGGAATGCTCTGCACTGAACCTTCTCAAAGGCTCACTGCCCAGGAGGTTTTGGATCATTGCTGGATGGAAAGCAATCAAACAAATTCCGAACAACTAAATGAACATAAAATCAGAAGTTGTGGAGAATGGGATGTTGGTGGAAACTCATTCTCTGCCTCGTTTATGTCCAGGAATCAGGACATCAGCTTCGGTGCTGGATCACCTACATGTGATGCCCAATCACCTACATGTGATGCCCAATCACCTACATTCACATGCAGATCATCATTTTCTTCCTTTTTGGTGGAACCAGTGACACCATGTGCTGTTTCTGGTGGGTTTTCATTTCAGAGCTCAGGTGGTTCCTCTGGTTTGGAATTTTCTTCTCCTGTTACCACAATGCCTAGCTTTGCATTTCTCAGCCCCAGTTCTGTTGTTGAACAAAGGAGTCATATATTAGAGTTCTCAACTAACACATCAGATGGAAATGCAATTACTGGAGAGTCTCCCCTTTGCTTTGGCCATGATGTTAAAGAAATGGATTGCAAGCCTGTGGAGGCTAAAAGGGCAGGTGGAACAAATTGGCATAGTGCATTGGGATTCCACAGCAAGAGAAACCGGACAATTGGACTTGGTGAGCGTGATCAACTTGATCTTGTGGTGACTGAATCAGTCATTCGTTGGTCATCATGCACACAACTTCCTACATCACCGAGATCATCTCTTGTCTGTTGA 1449 0.441 MAVAKGNSSGEPSTSYNCYKVASLTETILDTKQTSNLKDRYILGEQLGWGQFGVIRECSDKLTGEVLACKSIAKDRLVTSDDLQSVKLEIEIMARLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHRLEKHGRFSESQARVLFRHLMQMVLYCHENGVVHRDLKPENILLATRSSSSPIKLADFGLATYIKPGVILYILLSGMPPFWGKTKSRIFEAVKAADLRFPSEPWERISESAKDLIRGMLCTEPSQRLTAQEVLDHCWMESNQTNSEQLNEHKIRSCGEWDVGGNSFSASFMSRNQDISFGAGSPTCDAQSPTCDAQSPTFTCRSSFSSFLVEPVTPCAVSGGFSFQSSGGSSGLEFSSPVTTMPSFAFLSPSSVVEQRSHILEFSTNTSDGNAITGESPLCFGHDVKEMDCKPVEAKRAGGTNWHSALGFHSKRNRTIGLGERDQLDLVVTESVIRWSSCTQLPTSPRSSLVC 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4106g00003 482 Pfam Protein kinase domain 196 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4106g00003 482 Pfam Protein kinase domain 43 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4106g00003 482 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Gabi4106g00003 482 Gene3D Phosphorylase Kinase; domain 1 42 126 - -
Gabi4106g00003 482 SMART serkin_6 41 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4106g00003 482 ProSiteProfiles Protein kinase domain profile. 41 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4106g00003 482 Gene3D Transferase(Phosphotransferase) domain 1 197 290 - -
Gabi4106g00003 482 CDD STKc_CAMK 40 266 - -
Gabi4106g00003 482 SUPERFAMILY Protein kinase-like (PK-like) 38 335 IPR011009 -
Gabi4106g00003 482 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 279 - -
Gabi4106g00003 482 FunFam Calcium-dependent protein kinase 1 43 126 - -
Gabi4106g00003 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Gabi4106g00003 482 Gene3D Transferase(Phosphotransferase) domain 1 127 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4106g00003 Gabi-Chr4106 58266 61969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4106g00003 36 270 EF-hand Containing Proteins AT5G19360 44.944 1.18e-77 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi4106g00003 Pkinase 4.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4106g00003 - - pvu:PHAVU_004G122500g 775.778