Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4102g00005 ATGACCACCTCATTCTCTGACCTCCTTGCTTCTCCAACCGACCACAACCTCGGAGTCTCCGAAACTGGGTCGGGTAGTGTGCCCGAATTGAAGTGTACACAGCCTCCATCTCTCCCTCTTTCTCCTTCTTCTTACTTTGCTATCCCTCATGGGATGAGCCTTGCCGAGCTTCTTGACTCCCCTCTTCTCCTTAACTCTTCTAACATTTTTCCATCTCCAACAAATGGAGCATTTTCTGGTCAGGGCTTCAATTGGAAGAGTAGTTATGAAGAAAACCAAAAGAATGTTAAAGAAGAAGACAAAAGCTTCTCAACTTACTTCTTCCAAAATCAATCACAGCCTCCTGTTCCATCCACAACTGAGTTTCAATCTTCAACCTGCTCAGTTCAAACCGGATGGAGTTTTCAGGAAACCTCTAAACAAGATAGTTTTTCTTCAGAAATGAGTATGAGTATGACAAAAACAGAAAACTCTTCTTCGATGCAGAGTTTCACCCCTGAGAACATTGCTAGTGTACAAAACAACCACAAAAGTGGTTTTCAATCGGATTATAACAATTACCACCAACAAGTACAGACCTTAAGCAGAAGATCAGATGATGGTTACAATTGGAGGAAATATGGGCAAAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGCTACTACAAATGCACATACCCCAATTGCCCAACAAAGAAAAAGGTTGAGAGTTCTTTAGATGGCCAAGTTACTGAGATAGTTTACAAAAGTACACATAACCATCCCAAGCCTCAGGCTACCAAGAAGAACTCATTGTTTGCATCATCACTCGGAATTCCTCATTCAAATCATGTCAGCACTGAAATACAAGATGCCCCTCATGTCAGTGGACCAATGGATTCGGTTATGACCCCGGATAACTCTTCAATATCAATGGGAGATGATGATTTTGAGCAGAGTTCCAAGAAGAGTAAATCAGGAGGAGATGAATTTTATGAAGATGAACCTGATGCCAAAAGATGGAGAACAGAATGTGAAAATGAGGGTATATCAGCAGCAGGAAACAGAACAGTGAGAGAACCCAGAGTTGTAGTTCAAACAACCACTGACATCGATATTCTAGATGATGGTTACAGATGGAGGAAATACGGGCAGAAAGTAGTCAAGGGAAATACAAATCCAAGGAGTTACTACAAGTGCACAAGCCCAGGATGTGCAGTGAGGAAGCATGTAGAGAGAGCCTCAAATGATCTAAGGGCAGTGATCACAACCTATGAGGGAAAGCACAATCATGATGTCCCTGCAGCACGTGGCAGTGGTAAAAATTGTTTTAACAAATCACTGCCAAATACCACAAACAGCATCATCAGTGCAGCACCTGCTATAAGGTCCTTGAATGTGACTCAGTACACTAACAATTCAATCAACAATTCTCTTCAGAGTATTAGACCAGCAGCACTAGAACGACAATCACCCTTCAACCTCGAGATGAATCCAATGGAGTCTTACATCATGAATCACCAATATGACAATGTTTTTTCTTCCAGAGCCAAGGAGGAGCCTGTAGATGACTCCTTTTTTGAATCTTTGCTATGTTAA 1578 0.4163 MTTSFSDLLASPTDHNLGVSETGSGSVPELKCTQPPSLPLSPSSYFAIPHGMSLAELLDSPLLLNSSNIFPSPTNGAFSGQGFNWKSSYEENQKNVKEEDKSFSTYFFQNQSQPPVPSTTEFQSSTCSVQTGWSFQETSKQDSFSSEMSMSMTKTENSSSMQSFTPENIASVQNNHKSGFQSDYNNYHQQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVESSLDGQVTEIVYKSTHNHPKPQATKKNSLFASSLGIPHSNHVSTEIQDAPHVSGPMDSVMTPDNSSISMGDDDFEQSSKKSKSGGDEFYEDEPDAKRWRTECENEGISAAGNRTVREPRVVVQTTTDIDILDDGYRWRKYGQKVVKGNTNPRSYYKCTSPGCAVRKHVERASNDLRAVITTYEGKHNHDVPAARGSGKNCFNKSLPNTTNSIISAAPAIRSLNVTQYTNNSINNSLQSIRPAALERQSPFNLEMNPMESYIMNHQYDNVFSSRAKEEPVDDSFFESLLC 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4102g00005 525 Pfam WRKY DNA -binding domain 368 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi4102g00005 525 Pfam WRKY DNA -binding domain 199 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi4102g00005 525 MobiDBLite consensus disorder prediction 144 164 - -
Gabi4102g00005 525 FunFam WRKY transcription factor 33 354 420 - -
Gabi4102g00005 525 MobiDBLite consensus disorder prediction 294 308 - -
Gabi4102g00005 525 SUPERFAMILY WRKY DNA-binding domain 197 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi4102g00005 525 MobiDBLite consensus disorder prediction 1 34 - -
Gabi4102g00005 525 ProSiteProfiles WRKY domain profile. 199 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi4102g00005 525 Gene3D WRKY domain 184 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi4102g00005 525 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 114 461 IPR044810 GO:0003700
Gabi4102g00005 525 MobiDBLite consensus disorder prediction 284 330 - -
Gabi4102g00005 525 MobiDBLite consensus disorder prediction 309 330 - -
Gabi4102g00005 525 SUPERFAMILY WRKY DNA-binding domain 359 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi4102g00005 525 FunFam WRKY transcription factor 187 258 - -
Gabi4102g00005 525 SMART WRKY_cls 198 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi4102g00005 525 SMART WRKY_cls 367 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi4102g00005 525 Gene3D WRKY domain 354 420 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi4102g00005 525 ProSiteProfiles WRKY domain profile. 362 427 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4102g00005 Gabi-Chr4102 54703 57568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4102g00005 40 524 WRKY Transcription Factor Family AT2G38470 44.930 1.08e-101 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi4102g00005 WRKY 1.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4102g00005 K13424 - gmx:100127385 696.427