Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi409g00005 ATGGAAGATGATGAGGCATGCATGACTGGTCTAAATCTCGGACTGGGAATGGGAGGGTATGTGCCAAAGAAGGAGAAGCAGAAAGTAAACAATCCTGGGGGTTGTTTGAACCTAACGTTTGAGCTTTGTCCAAAAGGGGAAGCCATTGAGACAGAAGGGTTAAGTTTGAAGAGTGTAGATGAAGGACACCATCACCCGAATGAAAATAGTACTGATAACAACAATAGCAAGAACGGAAGCAGAAAGAAACTGAGGCTTACAAAGGAGCAATCAACCATGCTTGAGGAGAGCTTCAAGCTACATACAACTCTTAACCCCGCTCAGAAACAGGGACTTGCTGAGCAATTGAATTTAAAGCTTAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGCTGAAACAGACAGAGGTTGATTGCCAGTTCTTGAAAAAATGCTGTGAAAAACTAACCGATGAGAACCTAAGGTTGAAGAAGGAATTGAAGGAGCTGCGTGCACTAAAAGTTGAACAATCACCACTTTTCTTTCAAATCTCAAAGACTGCAACTTTGAGCATATGTTCATCGTGCGAAGAACTATTAAAGCCCAATGAAGGAAACAATGCAACCAATTCCGATGTGGTCCGAAACAGCAGCCACAAATTATAG 657 0.4231 MEDDEACMTGLNLGLGMGGYVPKKEKQKVNNPGGCLNLTFELCPKGEAIETEGLSLKSVDEGHHHPNENSTDNNNSKNGSRKKLRLTKEQSTMLEESFKLHTTLNPAQKQGLAEQLNLKLRQVEVWFQNRRARTKLKQTEVDCQFLKKCCEKLTDENLRLKKELKELRALKVEQSPLFFQISKTATLSICSSCEELLKPNEGNNATNSDVVRNSSHKL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi409g00005 218 MobiDBLite consensus disorder prediction 59 85 - -
Gabi409g00005 218 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Gabi409g00005 218 Coils Coil 143 173 - -
Gabi409g00005 218 SMART halz 137 180 IPR003106 GO:0006355|GO:0043565
Gabi409g00005 218 SUPERFAMILY Homeodomain-like 62 138 IPR009057 -
Gabi409g00005 218 SMART HOX_1 79 141 IPR001356 GO:0003677
Gabi409g00005 218 Gene3D - 62 141 - -
Gabi409g00005 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 207 - -
Gabi409g00005 218 CDD homeodomain 81 138 IPR001356 GO:0003677
Gabi409g00005 218 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Gabi409g00005 218 Pfam Homeodomain 81 135 IPR001356 GO:0003677
Gabi409g00005 218 Pfam Homeobox associated leucine zipper 137 170 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi409g00005 Gabi-Chr409 121402 122760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi409g00005 71 209 Homeobox Transcription Factor Family AT4G37790 62.411 1.63e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi409g00005 Homeodomain 5.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi409g00005 - K09338 gmx:100790522 266.929