Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi409g00001 ATGGCAGTAGACATGGTAAGCGCTTCAAGGTTTAGGATGGAAGAACACATGGCCATAGAAGAAGCTGCTTCAGCTGGGTTAAAGAGCATGGAGCATCTCATTCGAGTCCTTTCATCTCAAACCCCTTCTTCTTACAATCATTCTTCTTCTACTCACAACAACCTTAACTGCTCCGAAATCACTGACTTCACCGTCTCCAAGTTCAAACAGGTCATCAATCTATTGAACCGAACCGGTCACGCTCGCTTTCGCCGCGCACCCGAACCCCAACCTGAACCCGAACCCGAACCCGAACCTCAACCCCAGACCAAGGGTATGTCCCTAGATTTCGCCAAACCCAACCTCATAAACTCCAAGCCTAACAAAAAGGACGAAACTCTCACCATCTCCACCACCACCTCCTCCTCCTTCATGTCCTCCATCACCGCCGATGCCAGCGTCTCCGACGGCAAGATAGGCCCGTTCCTCGCTCCTCCCATCTCTGCCGGAAAACCCCCTCTCTCCTCCTCTCACCGGAAAAGGTGCCACGACGCTACCCTCTCCGGCAAAGTCCCCTCCTCCGGCCACTGTCATTGCTCCAAGAGAAGGAAATTACGTGTTAAACGAACGATCCGTGTGCCGGCGATAAGCTCGAAGATCGCCGATATTCCATCGGACGAGTACTCATGGAGGAAGTACGGTCAAAAACCGATCAAGGGTTCACCTTATCCTCGTGGTTACTATAAGTGCAGCACCGTGAGAGGGTGTCCGGCGAGGAAGCACGTGGAGCGAGCCCAAGACGATCCCAAGATGCTGATCGTGACGTACGAGGGTGAGCACCGTCACCCGCAACCGCAAACCGCCGTTACAGGCGGAATCGGTCTCAGCTTCCTGTCTAGCTGA 882 0.5374 MAVDMVSASRFRMEEHMAIEEAASAGLKSMEHLIRVLSSQTPSSYNHSSSTHNNLNCSEITDFTVSKFKQVINLLNRTGHARFRRAPEPQPEPEPEPEPQPQTKGMSLDFAKPNLINSKPNKKDETLTISTTTSSSFMSSITADASVSDGKIGPFLAPPISAGKPPLSSSHRKRCHDATLSGKVPSSGHCHCSKRRKLRVKRTIRVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQDDPKMLIVTYEGEHRHPQPQTAVTGGIGLSFLSS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi409g00001 293 Pfam WRKY DNA -binding domain 219 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi409g00001 293 FunFam WRKY transcription factor 65 201 278 - -
Gabi409g00001 293 Pfam Plant zinc cluster domain 172 215 IPR018872 -
Gabi409g00001 293 SMART WRKY_cls 217 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi409g00001 293 MobiDBLite consensus disorder prediction 82 126 - -
Gabi409g00001 293 SUPERFAMILY WRKY DNA-binding domain 215 278 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi409g00001 293 Gene3D WRKY domain 202 279 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi409g00001 293 ProSiteProfiles WRKY domain profile. 212 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi409g00001 293 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 280 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi409g00001 Gabi-Chr409 22436 23836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi409g00001 1 293 WRKY Transcription Factor Family AT2G24570 52.695 1.11e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi409g00001 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi409g00001 - - gmx:732587 386.341