Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4099g00006 ATGGGGTGGTATTTTTGGATTCTCTTGGGCTGGGAAATCACACAAGATTTTCTTGACAAAAATACCCTCCCTTATGGCACCATCTTTGTCTTTGATGGAAGACAGTTTCTGGTTACCCTTGTTGCTGGGAGTGGGGAGGCTGCAATTAGTATACATCAGTATCGTTGGCCACTGGGAATCGTCGTGCTCTATACACCACATTCAAGCGAGCAATACCGGAAAATCACAAGTGCCAGATCCTCCCCACCCCTTGAAAAAAACATGTGGTGGGCTTTTGGAGGACTCATCGCCGCTCCCATAATTTCATTCTGCCTCTATACCTTCATTATATATTATGAAGGTCTTGAATGCGCGCCGCCACAAGATAGGGGATCTGCTTGCGGAAACATATTTAACAACAGTTCTGCATGCGTCGATCCCAGTTACGAAGTGATATGTGAAGACAAGAAAGCAGTGATGTACATAAACTATGGAAGACGTGACGCTGCCGCCATTATAGCAGCACCTAATTCCACCTTCCGTTACATCACAACCGGAGTTGGAGTTCATCCCGATAATTGCTCTATCATCAATTGTCGCTCCTTACCGTACGAAAACATCACCTTCTTCACTTCTCCTGATGATCGTATTTTTTATTCTTTGATAGTTGTCAGCTGCGAAAAACCAGTAAATCATGATGGCTACTGGGACATCTCTGCAGCGCACTGTGGCAAAAACGAAAACCATTCTTATTCTTATGCTGTGGTCGGACCTTACACAGCCGCAGACGTGGCGGAGTCTTGCACCGTAGAGTTGGAGGTAATGATAAGTTTTTTGAGAACGATGAGATGTAGCAGAAACTGTGCTTATCCAGAGATTCATAATGAGTATGCGAAGGGGATAGAGCTTCGGTGGCGACCATTACGCTGTGATGACTGGGAACCGGAACGCTGGGACTTCATCTGCACGCTGCAAGCTGCAGGGAATAGTTTCCTCCCTTTTGGAATGAGTGTGATGGCATGGGTCGGTGCAAAATTTGTACTTGGGTCACCCTTTGTGGTTGCTTTCTTGATATATAAATGGAGAAAATGGAATTTATCCGGAGATGATAATGACACGGTTGAAGATTTTATACAGAGTCACAATAATTTCATGCCCATAAGGTACTCTTACTCTGAAATTAAAAGGATGACCAAAGGTTGCAAGCATAAGTTAGGTGAAGGAGGCTATGGTACTGTTTATAAAGGGGAGCTTCGAAGCAAACGTTTTGTAGCTGTTAAGGTATTGACCAAGGCCAAAACCAATGGAGAGGAGTTCATCAATGAAGTTGCAACCATTGGTAGAATTCGTCATGTCAATGTGGTCCAGCTAATTGGATTTTGTGCTGAGAGAACAAAGCAAGCTCTTGTCTACGAGTTCATGTCTAATGGGTCTCTTGAGAAACACACATTTTCACAAGAGCAAGGAAACTTATCAATAAGCTACGAGAAAATCTATGACATTTCTCTTGGAATTGCTCGTGGGATTGAATACCTACACCAAGGTTGTGACATGCAAATCATACACTTTGATATAAAACCTCATAACATTCTTCTTGATGAGAATTTCAAACCCAAGATATCCGATTTTGGGCTGGCAAAGTTGTACCGAATAGATGAAAGCATTTTATCTCTAACAGCAGCAAGAGGAACAATGGGATACATGGCTCCTGAGTTGTTGTACAAAAACATTGGAGGCATCTCACACAAAGCTGATGTTTATAGTTTTGGGATGATGTTGATGGAAATGGCAGGTAGAAAAAAGAACTTAAATTTTATGGAGAATTCTTGGCAAAACTACTTTGCTAAATGGGTTTATGACCAATTTGAGGAAACAATATATATAAACAATGCCACCGATGAGGAAAAGAATGTAGCAAAGAAGATGATTGTGATAGCCTTAAAATGCATACAAATGAAGCCAGGTGATCGTCCCTCAATGAACGAAGTGATAGAGATGCTTGAAGCTGATGATGTGCTCCAAGATGTTCTTCCACCAGATCCAGAACCTCTCCTAACTTGGCAGAGGATGTCAGCAGATGAAAAATGGATTTGA 2073 0.4216 MGWYFWILLGWEITQDFLDKNTLPYGTIFVFDGRQFLVTLVAGSGEAAISIHQYRWPLGIVVLYTPHSSEQYRKITSARSSPPLEKNMWWAFGGLIAAPIISFCLYTFIIYYEGLECAPPQDRGSACGNIFNNSSACVDPSYEVICEDKKAVMYINYGRRDAAAIIAAPNSTFRYITTGVGVHPDNCSIINCRSLPYENITFFTSPDDRIFYSLIVVSCEKPVNHDGYWDISAAHCGKNENHSYSYAVVGPYTAADVAESCTVELEVMISFLRTMRCSRNCAYPEIHNEYAKGIELRWRPLRCDDWEPERWDFICTLQAAGNSFLPFGMSVMAWVGAKFVLGSPFVVAFLIYKWRKWNLSGDDNDTVEDFIQSHNNFMPIRYSYSEIKRMTKGCKHKLGEGGYGTVYKGELRSKRFVAVKVLTKAKTNGEEFINEVATIGRIRHVNVVQLIGFCAERTKQALVYEFMSNGSLEKHTFSQEQGNLSISYEKIYDISLGIARGIEYLHQGCDMQIIHFDIKPHNILLDENFKPKISDFGLAKLYRIDESILSLTAARGTMGYMAPELLYKNIGGISHKADVYSFGMMLMEMAGRKKNLNFMENSWQNYFAKWVYDQFEETIYINNATDEEKNVAKKMIVIALKCIQMKPGDRPSMNEVIEMLEADDVLQDVLPPDPEPLLTWQRMSADEKWI 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4099g00006 690 Pfam Protein kinase domain 396 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4099g00006 690 Gene3D Phosphorylase Kinase; domain 1 366 466 - -
Gabi4099g00006 690 ProSiteProfiles Protein kinase domain profile. 392 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4099g00006 690 ProSitePatterns Protein kinases ATP-binding region signature. 398 420 IPR017441 GO:0005524
Gabi4099g00006 690 FunFam PR5-like receptor kinase 467 670 - -
Gabi4099g00006 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Gabi4099g00006 690 Gene3D Transferase(Phosphotransferase) domain 1 467 669 - -
Gabi4099g00006 690 FunFam serine/threonine-protein kinase PBS1-like 361 466 - -
Gabi4099g00006 690 SMART serkin_6 392 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4099g00006 690 PANTHER RUST RESISTANCE KINASE LR10-RELATED 364 674 IPR045874 GO:0004672
Gabi4099g00006 690 SUPERFAMILY Protein kinase-like (PK-like) 369 661 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4099g00006 Gabi-Chr4099 62647 68782 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4099g00006 378 674 Receptor kinase-like Gene Family AT5G38280 53.398 2.81e-101 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi4099g00006 Pkinase 1.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4099g00006 - - tpra:123914142 712.605