Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4099g00005 ATGGCTGTGTGGCTAAAAAAGTGCATCCCTTTCTTGTCCTTGTGCTTGTTAACTATCCTTGCAGAAACTAGTTCCCTTGATCAATGCAAAGAATCAAGTTGTGGTATTCATGGACCAACCATCAGATTTCCCTTCAGACTAAAAGGAAGACAACCAGAATGGTGTGGCTATAATTCTTGGTTTGATCTATATTGCACAGATAGCAACGACACGGTGCTTGAACTACCATTCTCTGCTAAGGCCTTAGTCAAAAGCATAAACTACACATCACAACTCATAAGTGTGTCATATCCTGAAGCCTGTCTTCACAAACACATTGCAAGTTTCGATATATCTGCATCTCCTTTTAGGTTCAACGATGAGTTCAAACTAGACCTTTATGCATTATTCAATTGTTCAGCAGGGATGTCTCACGGGAACACAGATGAGAGTTATATAATAACAACTGGAAACTTTTCTTGCCTCAATGTACCTGGTTTTAAAGTTATAGCAGCAAGTTCCACATCACAAATAATCTTTGCCCCCTTATTATCTTGCACCAGAATCCAAAGCCTTGTATTATTGCCTAATTCTTTGTTTAACAAGAACATTGATGCTGGTCTAAATTGGTTCCAACCAGATTGCAAAAACTGTGAACGAAAAGGTGGGCAATGCAAGGTTAAAGAAAACAAATCTAAACACGGATTCGAATGTAACAGTCCCAAAGCAGGTTCATCAAAAGGGAAAGTGCTGGCTGGTGAAATCCTAGGCCCTTTTTTGCTTATATTGGTTGGAGTCACAGCATATTGTTTCTATGTAGCTGGCATGGAAAGGAAGCATTATATAAGAATCAAAAAGTTTTTGAAGGATTACAAAGCACTTAAGCCTGCCAGATACTCTTATGCAGATATAAAGAGAATTACAAATCAGTTTAAGGAAGAACTGGGTCAGGGAGCTTATGGAACTGTCTTCAAAGGAAAGCTATCAAATGAAATTCAGGTAGCTGTTAAGGTCCTAAACACATCAACAGGGAATGGTCAAGAGTTCATCAATGAAATGGAAGCAATGTGTCAAATTCACCATGTCAATGTGGCTCGCTTGGTTGGCTTTTGTGCAGATGGACTCGGACGAGCTTTGGTGTACGAGTTTTTACCAAACGGTTCATTGCAGAAATTCATATCATCAGCAGACAATAAGGATGTCTTTCTAGGTTGGGAAATGCTACAAAATATTGCTCTTGGTATAGCCAAGGGAGTTGAGTATCTTCACCAAGGTTGTGATAAACGAATTCTCCATTTTGATATCAAACCTCATAATGTATTGCTAGACAACAATTTCACACCAAAAATCTCTGATTTTGGTTTGGCCAAGCTTTGTTCCAAGGATCAAAGTATTGTGTCAATGACCGCAGCTAGGGGCACTTTGGGCTACATTGCCCCGGAGGTATTTTCTAGGAACTTTGGCAATGTATCCTATAAGTCAGACGTTTATAGTTATGGGATGTTGCTGCTTGAAATGGTTGGAGGAAGGAAGATCACTGATGTCACATCAGAAAATAGCAGCCATGTTAATTATCCACAATGGATTTATAATCTTCTAGAGAACAATGAAGACATAAAAATCCATATAGAAGAAGAAGACACTAGAGTTGCAAAGAAGCTATCAGTTGTGGGACTTTGGTGCATTCAGTGGCACCCAATAAATCGTCCAACCATGAAAGCTGTGGTTCAAATGCTGGAAGGAGATGGAGAGAACCTAGAGATGCCTCCTAATCCTTTTGCCTCTACATCTGCGACCAGAACAAGTGCCAGATTTGGTACTTTACGTCTGAACCAAGAGCTTGATGTTATCTCGGAAATAGAATGA 1845 0.3962 MAVWLKKCIPFLSLCLLTILAETSSLDQCKESSCGIHGPTIRFPFRLKGRQPEWCGYNSWFDLYCTDSNDTVLELPFSAKALVKSINYTSQLISVSYPEACLHKHIASFDISASPFRFNDEFKLDLYALFNCSAGMSHGNTDESYIITTGNFSCLNVPGFKVIAASSTSQIIFAPLLSCTRIQSLVLLPNSLFNKNIDAGLNWFQPDCKNCERKGGQCKVKENKSKHGFECNSPKAGSSKGKVLAGEILGPFLLILVGVTAYCFYVAGMERKHYIRIKKFLKDYKALKPARYSYADIKRITNQFKEELGQGAYGTVFKGKLSNEIQVAVKVLNTSTGNGQEFINEMEAMCQIHHVNVARLVGFCADGLGRALVYEFLPNGSLQKFISSADNKDVFLGWEMLQNIALGIAKGVEYLHQGCDKRILHFDIKPHNVLLDNNFTPKISDFGLAKLCSKDQSIVSMTAARGTLGYIAPEVFSRNFGNVSYKSDVYSYGMLLLEMVGGRKITDVTSENSSHVNYPQWIYNLLENNEDIKIHIEEEDTRVAKKLSVVGLWCIQWHPINRPTMKAVVQMLEGDGENLEMPPNPFASTSATRTSARFGTLRLNQELDVISEIE 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4099g00005 614 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Gabi4099g00005 614 Pfam Wall-associated receptor kinase galacturonan-binding 29 96 IPR025287 GO:0030247
Gabi4099g00005 614 Pfam Protein kinase domain 304 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4099g00005 614 FunFam serine/threonine-protein kinase PBS1-like 272 376 - -
Gabi4099g00005 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Gabi4099g00005 614 Gene3D Phosphorylase Kinase; domain 1 266 376 - -
Gabi4099g00005 614 Gene3D Transferase(Phosphotransferase) domain 1 377 581 - -
Gabi4099g00005 614 SUPERFAMILY Protein kinase-like (PK-like) 287 573 IPR011009 -
Gabi4099g00005 614 FunFam PR5-like receptor kinase 377 584 - -
Gabi4099g00005 614 ProSiteProfiles Protein kinase domain profile. 302 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4099g00005 614 SMART serkin_6 302 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4099g00005 614 PANTHER RUST RESISTANCE KINASE LR10-RELATED 273 590 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4099g00005 Gabi-Chr4099 59376 61773 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4099g00005 195 591 Receptor kinase-like Gene Family AT5G38260 46.798 1.17e-114 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi4099g00005 Pkinase 6.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4099g00005 - - tpra:123914140 995.342