Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4099g00003 ATGTTGTGGGCTTTGGGGGGATGCATCGCAGCTCTCATAATTTCAGTGTGCCTCTTCACCTCCTTTTTTATAATTAGTGATTATCCTACATGCTCGTGGCCACATGAAAAGGAATCTTGCGGGATCATATTCAACAATTCTGCAGTACCACATTCATATTGGGTGGATCCCAGTTACGAAGTGATATGTGAAGACAACAAAGCGGTGATGTACATAAACTATGGAAGACGTGACGCAGCCGCCATTATAGCAGCACCTAATTCCACCACCACCTTCCGTTACATCACAACCGGAGTTGGATCAGGTCATCCCAATTATTGCTCTCTCATCAATTCTCTCTCCTTACCGTACGAAGACATCACCTTCTCCACTTTTCCTGCTGATCGTATTAGTGATTCTTTGATAGTTGTCAGCTGCGAAAAACCAGTAAATCATGATGGCTACTGGGACATCTCAGCAGCGCACTGTGGCAAAAACGAAAACCTTTATTATTCTTATGCTTTGTTCGGACCTTACGTCACGGCCGCAGACGTGGCGGAGTCATGCACCGTAGACTTGAAGGTAACGATAAGTCGGTTGAGAACGATGAGATGTAGCAGAAACTGTACTTATCCAGAGATTCAGAGTGAGTATGCGAAGGGGATAGACCTTCGGTGGCGACCATTACGCTGCGATGACCGGGAACCGGAACCGGAACCGGAACCGGATCGGGATGAGATTCAGGTTGAGTACAAGTACTCCTATTTTGGAAGTAAATCCGACTGCACGCAGCACGCAGTAGCGTACAGTTTCGTCTATTTTGGAATGAGTGGGATGGCATGGGTCGTTGTAAAATTTGTACTTGGGTCACCCTTTGTGGTTGCTTTCTTGATATGTAAATGGAGAAAAAGGAATTTATCCGGAGATGTTGATGACACGGTTGAAGATTTTATACAGAGTCACAATAATTTCATGCCCATAAGGTACTCTTACTCTGAAATAAAAAGGATGACCAAAGGTTTCAAGCTTAAGTTAGGTGAAGGAGGCTATGGTACTGTTTATAAAGGGGACCTTCGAAGCAAACGTATTGTAGCTGTTAAGGTATTATTGACCAAGGCCAAAACCAATGGAGAGGAGTTCATCAATGAAGTTGCAACCATTGGAAGAATTCGTCATGTCAATGTGGTCCAGCTAATTGGATTCTGTGCTGAGAGAACAAAGCAAGCTCTTGTCTACGAGTTCATGTCTAATGGGTCTCTTGAGAAACACACATTTTCACAAGAGCAAGCAAACTTACCAATAAGCTACCAGAAAATCTATGACATTTCTCTTGGAATTGCTCGTGGGATTGAATACCTACACCAAGGTTGTGACATGCAAATCATACACTTTGATATAAAACCTCATAACATTCTTCTTGATGAGAATTTCAAACCCAAGATATCCGATTTTGGGCTGGCAAAGTTGTACCGAATAGATGAAAGCATTTTATCCCTAACAGCAGCAAGAGGAACAATGGGATACATGGCTCCTGAGTTGCTGTACAAAAACATTGGAGGCATCTCACACAAAGCTGATGTTTATAGTTTTGGGATGATGTTGATGGAAATGGCAGGTAGAAAGAAGAACTTAAATTTTATGGAGAATTCTTGGCAAAACTACTTTGCTAAATGGGTTTATGACCAATTTGAGGAAACAATAGAAATAAACAATGCCACCGATGAAGAAAAGAATATAGCAAAGAAGATGATTGTGATAGCCTTAAAATGTATACAAATGAAGCCAGGTGATCGTCCCTCAATGAACGAAGTGATAGAGATGCTTGAAGCTGATGATGTGCTCCAAGATGTTCTTCCACCAGATCCAGGACCTCTCCTAACTTGGCAAAGGATGTCAGCAGATGAAAATGGATTTGATGACAACTTCCATTCATCATGA 1917 0.421 MLWALGGCIAALIISVCLFTSFFIISDYPTCSWPHEKESCGIIFNNSAVPHSYWVDPSYEVICEDNKAVMYINYGRRDAAAIIAAPNSTTTFRYITTGVGSGHPNYCSLINSLSLPYEDITFSTFPADRISDSLIVVSCEKPVNHDGYWDISAAHCGKNENLYYSYALFGPYVTAADVAESCTVDLKVTISRLRTMRCSRNCTYPEIQSEYAKGIDLRWRPLRCDDREPEPEPEPDRDEIQVEYKYSYFGSKSDCTQHAVAYSFVYFGMSGMAWVVVKFVLGSPFVVAFLICKWRKRNLSGDVDDTVEDFIQSHNNFMPIRYSYSEIKRMTKGFKLKLGEGGYGTVYKGDLRSKRIVAVKVLLTKAKTNGEEFINEVATIGRIRHVNVVQLIGFCAERTKQALVYEFMSNGSLEKHTFSQEQANLPISYQKIYDISLGIARGIEYLHQGCDMQIIHFDIKPHNILLDENFKPKISDFGLAKLYRIDESILSLTAARGTMGYMAPELLYKNIGGISHKADVYSFGMMLMEMAGRKKNLNFMENSWQNYFAKWVYDQFEETIEINNATDEEKNIAKKMIVIALKCIQMKPGDRPSMNEVIEMLEADDVLQDVLPPDPGPLLTWQRMSADENGFDDNFHSS 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4099g00003 638 Gene3D Phosphorylase Kinase; domain 1 306 407 - -
Gabi4099g00003 638 FunFam serine/threonine-protein kinase PBS1-like 302 407 - -
Gabi4099g00003 638 SMART serkin_6 332 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4099g00003 638 PANTHER RUST RESISTANCE KINASE LR10-RELATED 304 615 IPR045874 GO:0004672
Gabi4099g00003 638 Pfam Protein kinase domain 337 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4099g00003 638 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Gabi4099g00003 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Gabi4099g00003 638 CDD STKc_IRAK 338 602 - -
Gabi4099g00003 638 SUPERFAMILY Protein kinase-like (PK-like) 309 602 IPR011009 -
Gabi4099g00003 638 Gene3D Transferase(Phosphotransferase) domain 1 408 610 - -
Gabi4099g00003 638 FunFam PR5-like receptor kinase 408 611 - -
Gabi4099g00003 638 ProSiteProfiles Protein kinase domain profile. 332 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4099g00003 Gabi-Chr4099 34414 38195 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4099g00003 318 615 Receptor kinase-like Gene Family AT5G38280 52.922 2.24e-99 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi4099g00003 Pkinase 5.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4099g00003 - - tpra:123914142 703.36