Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi4094g00002 | ATGAGAAGAAAGACTCTCGGCGGACGAAGGCGTACGCCGTCGACAACTCCTCCTTCTCTCTCCGCAATTCCTTTCCTCTCCACCCCTCAGGACGAACTCAACGCAACCGTAGTGTTTGATAGCGAGAGCGACGATGACCATCCACACGTTCGAATACCTGATTGCATCGATCACCATTCCGAACCTGTTGATTTGTTGGACGAGAATATCTGCATATGTTGCAATAAAAGCGAAAGAGCGTTGGTTTGTAGCGAAAACGGTTGCCCCGTAACTGTCCATGCCAACTGCATCGGTTCCGAACCTAAATTCGATGATTCTGGTAAGTTCTTCTGCCCTTACTGCTGGTTCAAGCGAGCAGTGAACAAGAGTCGCGAATTGAGGGAAAAGGCCATGGTGGCGAAGAAAGCTTTGTCGACTTTTTTAGATAAAGGCCAATTGGCAAAGAAAGATGGAAATTTTAATAAAGAAGAAGAAGAAGATGTTAAGGTGATGAATAGGGCTAAACCTGAAACGGAAGTGAAAGAAAGTTTTGAATTTGAAGAACGTGTTAATGATAGTGAGGATGTAGGTGAAAGAATTGTTGTGGAGAATAAAGGTGAGGTTTCTGCGACGGGTAGTTCTGTGAGTGAAACTAAAGATTCGGATTCTGAAGCTGTGTCAATGAAGAAACTGAAGGTTCGAAACAAGGTTGTTGCTTCTTCTATCAGGAAACCATTGTTACGGGAGCGTAACATTAGAGGGAGAAATGCTGGTGATGTAAATGAGCAAGTTACTAGCTCCAGTAAATCACTGAGGTCGCCTAAGCAAGTGGCAAAGCGGACTTCTCTGACCGCAAAACGTAAGAGATTACTTTGGGCTACTGAAGAAGAAAAAGCTCTGAAGGAAGGAGTGTTAAGGTTCTCCACGGAAAATCAGAACATCCCTTGGAGGAAAATTTTAGAATTTGGTAGTCATGTATTTGATAAGACTCGTACTCCTAGTGATCTGAAGGATAAATGGAAGAACATTACCTCCAGGGAAGGATGCAAGTAG | 1032 | 0.437 | MRRKTLGGRRRTPSTTPPSLSAIPFLSTPQDELNATVVFDSESDDDHPHVRIPDCIDHHSEPVDLLDENICICCNKSERALVCSENGCPVTVHANCIGSEPKFDDSGKFFCPYCWFKRAVNKSRELREKAMVAKKALSTFLDKGQLAKKDGNFNKEEEEDVKVMNRAKPETEVKESFEFEERVNDSEDVGERIVVENKGEVSATGSSVSETKDSDSEAVSMKKLKVRNKVVASSIRKPLLRERNIRGRNAGDVNEQVTSSSKSLRSPKQVAKRTSLTAKRKRLLWATEEEKALKEGVLRFSTENQNIPWRKILEFGSHVFDKTRTPSDLKDKWKNITSREGCK | 343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi4094g00002 | 343 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 158 | IPR013083 | - | |
| Gabi4094g00002 | 343 | MobiDBLite | consensus disorder prediction | 200 | 220 | - | - | |
| Gabi4094g00002 | 343 | SUPERFAMILY | FYVE/PHD zinc finger | 67 | 121 | IPR011011 | - | |
| Gabi4094g00002 | 343 | SUPERFAMILY | Homeodomain-like | 280 | 337 | IPR009057 | - | |
| Gabi4094g00002 | 343 | MobiDBLite | consensus disorder prediction | 251 | 273 | - | - | |
| Gabi4094g00002 | 343 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 53 | 340 | - | - | |
| Gabi4094g00002 | 343 | ProSitePatterns | Zinc finger PHD-type signature. | 71 | 114 | IPR019786 | - | |
| Gabi4094g00002 | 343 | Gene3D | - | 273 | 339 | - | - | |
| Gabi4094g00002 | 343 | MobiDBLite | consensus disorder prediction | 200 | 214 | - | - | |
| Gabi4094g00002 | 343 | CDD | SANT_TRF | 285 | 337 | - | - | |
| Gabi4094g00002 | 343 | ProSiteProfiles | Myb-like domain profile. | 277 | 337 | IPR001005 | - | |
| Gabi4094g00002 | 343 | CDD | PHD_SF | 70 | 114 | - | - | |
| Gabi4094g00002 | 343 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Gabi4094g00002 | 343 | MobiDBLite | consensus disorder prediction | 245 | 275 | - | - | |
| Gabi4094g00002 | 343 | MobiDBLite | consensus disorder prediction | 10 | 25 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi4094g00002 | Gabi-Chr4094 | 22224 | 27157 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi4094g00002 | 282 | 337 | Single Myb Histone (SMH) Gene Family | AT3G49850 | 45.614 | 8.47e-06 | 45.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi4094g00002 | - | - | mtr:11429054 | 326.25 |