Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4093g00004 ATGGATTGTACAGCTGCAAGAAAGACTCAAAAGGCTGATCGAGAAAAATTAAGGAGGGATCGACTTAATGAACAGTTTGTAGAGCTGGGTAACATCCTAGACCCTGATAGGCCAAAAAATGACAAAGCAACTATTATAGGTGATACAATTCAATTGCTAAAGGATCTTACTTCACAAGTTAGTAAACTCAAAGATGAATATGCTACGCTAAATGAAGAATCTCGTGAGTTGGCTCAGGAGAAAAATGATCTCAGAGAAGAGAAAGCTTCTCTTAAATCAGATATTGAGAACTTGAATAATCAGTATCAGCAGCAAATCAGAACTATGTATCCTTGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCATATCCGTATCCAGTGCCAATGCCAGTACCTCCTGGTCCGATTCCCATGCAGCCATACCCCTACTATGCTAATCAACATCCTGCAGTCATCCCTAACCCATGTTCAACATTTGTTCCTTATTTAGCCCCCAATACCCTTGTTGAACAGCAATCCACCCAGTATGTATCCCCACCACTTCATCCGGGTAGTCGGTCCCAGTCCCATGTGTCAGGGAAACAAGACTCCAAAAACAAATCATCCAGGGAGAGCAAGGCTGGAAAAAGTGAGGATTCTAATGATGTCACTACAGACCTCGAGTTGAAGACTCCTGGGTCTTCTGCAGATCAGGATTTATCATCCGGACAAAGAAAATCTAGCAAGTTGTCAAGGAAGGAAAGCATTTGCACAGAAGGGAGTTCGTTTGGTAGGTGTTCTTCATCTCAAAGCGTTCAGGATAGCTCATCAAGTAGTGTAGCTGCCAGCAGAAAGCCTAATGAATGA 855 0.4269 MDCTAARKTQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATIIGDTIQLLKDLTSQVSKLKDEYATLNEESRELAQEKNDLREEKASLKSDIENLNNQYQQQIRTMYPWTAMDHSVMMAPPSYPYPVPMPVPPGPIPMQPYPYYANQHPAVIPNPCSTFVPYLAPNTLVEQQSTQYVSPPLHPGSRSQSHVSGKQDSKNKSSRESKAGKSEDSNDVTTDLELKTPGSSADQDLSSGQRKSSKLSRKESICTEGSSFGRCSSSQSVQDSSSSSVAASRKPNE 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4093g00004 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Gabi4093g00004 284 MobiDBLite consensus disorder prediction 199 221 - -
Gabi4093g00004 284 MobiDBLite consensus disorder prediction 222 241 - -
Gabi4093g00004 284 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Gabi4093g00004 284 Coils Coil 5 25 - -
Gabi4093g00004 284 MobiDBLite consensus disorder prediction 250 284 - -
Gabi4093g00004 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 75 IPR036638 GO:0046983
Gabi4093g00004 284 Coils Coil 53 108 - -
Gabi4093g00004 284 PANTHER TRANSCRIPTION FACTOR BHLH121 2 282 IPR044579 GO:0003700|GO:0006879
Gabi4093g00004 284 CDD bHLH_AtILR3_like 11 85 - -
Gabi4093g00004 284 Gene3D - 5 89 IPR036638 GO:0046983
Gabi4093g00004 284 MobiDBLite consensus disorder prediction 176 284 - -
Gabi4093g00004 284 SMART finulus 12 62 IPR011598 GO:0046983
Gabi4093g00004 284 MobiDBLite consensus disorder prediction 176 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4093g00004 Gabi-Chr4093 43730 46957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4093g00004 4 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 61.355 2.46e-95 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4093g00004 HLH 4.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4093g00004 - - gmx:100804250 447.588