Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4090g00003 ATGGACCCGAAGTTCATCGGAAAGCCGCCGGCGACGGTGGACATAGAGCGGATGCCGGAGCGTGGGTCCCACCACCGGAGGTCTCACTCCGACACCTCCTTTCGCTTCGCCGCCAACTTCGACGACCTTCTCCTCTTCGACACTTCCGACCTCGACATCTCCAACCTCCCTTCACCGCTCCCGTCCGCCGGCGGAGGCGGCGGAGTTCCGATGTCCGTTGATTCGGACGAGTCCGGTGGGAGGCCTAGGCCGTCGGGTCCCCCCATCGGCCACCTCCGGAGCTTGTCAGTGGACTCCGACTTCTTCGATGGACTCGGATTCGCCGGCGCCGGCGACGAGAAACTTAGCGGGAAGGGCTCCGGCGAGAGGAGGGTGGGTCATCATCGGCATAGCAATTCGATGGATGGGTCTTTGACGTCGTCGTTTGAGGCTGACTCGTCCATGGTGATGGCGATGGTGGACGGTGTGAAGAAAGCTATGGCCCCTGAGAAACTCGCTGAGCTTTCTCTTATTGATCCCAAGAGAGCTAAAAGGATTCTTGCTAATAGGCAATCTGCTGCAAGATCAAAGGAGAGGAAAGTTCGTTATACAAATGAGTTGGAGAGGAAGGTGCAGACTCTTCAGACTGAAGCAACTAATCTCTCTGCACAGCTTACCATTCTTCAGAGAGATACTACAGAGTTGACCACTGAGAATAAGGAGCTCAAAATGCGGTTAGAGGCTTTGAAACAAGAAGCACAGCTTAGAGAAGATCTCAATGAGGCATTGAGGGAAGAAATTCAGCGCCTTAGGGCACAAAATAGTCATTTGGGTGCTATAACTGGTGATCCTTCTTTTGGTGGGGTGTTCTCCCAGTTGGCCTCCCAGTTTGCCATGCAACGTTTGACTAATCCTCCGCCCCAGCAGGCACAACAGCAGCCACAGCATGGCCAGCCTCCTCCTCCTTCTGATCACCCTTTCAATGGGCCGCGCCACCCTAACTTCATGGACTTCAATCAACAGAAGTAA 1008 0.5466 MDPKFIGKPPATVDIERMPERGSHHRRSHSDTSFRFAANFDDLLLFDTSDLDISNLPSPLPSAGGGGGVPMSVDSDESGGRPRPSGPPIGHLRSLSVDSDFFDGLGFAGAGDEKLSGKGSGERRVGHHRHSNSMDGSLTSSFEADSSMVMAMVDGVKKAMAPEKLAELSLIDPKRAKRILANRQSAARSKERKVRYTNELERKVQTLQTEATNLSAQLTILQRDTTELTTENKELKMRLEALKQEAQLREDLNEALREEIQRLRAQNSHLGAITGDPSFGGVFSQLASQFAMQRLTNPPPQQAQQQPQHGQPPPPSDHPFNGPRHPNFMDFNQQK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4090g00003 335 MobiDBLite consensus disorder prediction 116 131 - -
Gabi4090g00003 335 Coils Coil 197 273 - -
Gabi4090g00003 335 Pfam bZIP transcription factor 174 232 IPR004827 GO:0003700|GO:0006355
Gabi4090g00003 335 MobiDBLite consensus disorder prediction 57 93 - -
Gabi4090g00003 335 MobiDBLite consensus disorder prediction 1 32 - -
Gabi4090g00003 335 FunFam Transcription factor VIP1 173 226 - -
Gabi4090g00003 335 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 12 311 - -
Gabi4090g00003 335 SUPERFAMILY Leucine zipper domain 174 226 IPR046347 GO:0003700|GO:0006355
Gabi4090g00003 335 MobiDBLite consensus disorder prediction 14 32 - -
Gabi4090g00003 335 MobiDBLite consensus disorder prediction 112 139 - -
Gabi4090g00003 335 MobiDBLite consensus disorder prediction 305 321 - -
Gabi4090g00003 335 CDD bZIP_plant_RF2 175 224 IPR044759 GO:0003700|GO:0006355
Gabi4090g00003 335 Gene3D - 173 226 - -
Gabi4090g00003 335 MobiDBLite consensus disorder prediction 293 335 - -
Gabi4090g00003 335 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 172 235 IPR004827 GO:0003700|GO:0006355
Gabi4090g00003 335 SMART brlzneu 170 234 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4090g00003 Gabi-Chr4090 60457 66211 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4090g00003 9 334 bZIP Transcription Factor Family AT1G43700 48.451 1.30e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi4090g00003 bZIP_1 1.8e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4090g00003 K20557 - gmx:778142 451.44