Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4085g00002 ATGGATCCGTTTGGTGCAAATGGAAACGGGAATGAGGATGCTTTGCCACCACCACCTCCCGTTGTGCCATCAGATATTGTTCCAATCACAGCAGCTCAGGAGCTCCCTCCTGAACCAGTTAAGAAAAAGGTTTCCCGAGTTCCAATAGCCAGGCGCGGTCTGGCCACAAAGGGAACGAAGCTGTCTCTTCTTACTAATCACTTCAAAGTTAACGTTGCTAACAATGATGGACATTTCTTCCAGTATAGTGTCTCTTTTTCTTATGAAGATGGACGCCCTGTAGAAGGCAAGGGTGTAGGGAGGAAAGTAATAGACAGGGTGCAGGAAACTTATGGTTCTGAGTTGAATGGAAAGGACTTCGCTTATGATGGTGAAAAGACTCTGTTTACTATTGGCTCTCTTGCTCGAAACAAGCTTGAGTTTACTGTTGTTCTGGAGGATGTCATATCTAACAGAAATAATGGAAACTGCAGCCCTGATGGTCATGGAAGTCCAAATGAGAGTGACAAGAAAAGGATGAGACGGCCCTATCGTGCCAAGACATTTAAAGTTGAGATTAGCTTTGCTTCGAAAATTCCATTGCAGGCCATTTCCAATGCCTTACGTGGGCAGGAATCAGAGAATTTCCAAGAAGCCATTAGAGTGCTTGACATCATACTGAGGCAACATGCTGCTAAGCAAGGCTGCCTGCTTGTGCGGCAATCTTTCTTCCACAATGATCCAAAGAATTTTGCAGATGTAGGAGGTGGTGTTCTAGGCTGCAGAGGATTCCATTCGAGTTTTAGAACAACACAAAGTGGCCTGTCTCTTAACATAGATGTCTCAACTACCATGATAATTCAACCTGGGCCTGTGGTGGACTTCTTAATTGCTAATCAAAATGTGAGAGATCCATTTTCACTTGACTGGGCAAAGGCCAAGAGGACACTAAAAAATCTGAGGATTAAAGTCAGCCCATCCAATCAGGAGTACAAAATTACTGGGCTCAGCGAACTCCCATGCAAAGAGCAGATGTTTACACTGAAGAAAAGGGATGGTGATGATGTTACCGAGGAGGAAGTAACTGTTTACGATTATTTTGTTAATAATCGAAAGATGGAACTCCGCTACTCTGCTGATCTTCCTTGTATCAATGTTGGGAAGCCAAAACGTCCTACATATATACCCGTTGAGCTTTGTTCTTTGCTATCGTTGCAACGATACACAAAAGCACTTTCCACCCTTCAGAGGTCTTCATTAGTGGAGAAGTCCAGGCAGAAGCCACAAGAGAGGATGAGGGTTTTATCTGATGTTCTGAAAATCAGCAATTATGGTGCTGAACCCATGCTTCACAAATGTGGAATCACAATAAAACCTGGCTTTGCTCAAGTCGAGGGTCGTGTTTTGCAAGCCCCAAGGTTGAAGTTTGGCAATGGGGAGGATTTCAATCCAAGGAATGGGAGATGGAATTTTAATAATAAGAAAATAGCGCAGCCAACTAAGATAGAAAGATGGGCTGTGGCTAATTTTTCTGCACGATGTGATGTGCGAGGGCTTGTGAGGGATCTGATTAAATGTGCAGGAATGAAAGGAATTCCGATAGAAGATCCTTTTGATGTATTTGAAGAAAATGGTCAGTTTAGGCGGGCCCCACCAATGGTTAGAGTGGAGAAGATGTTTGAGAACATTCAGTCTAAACTTCCTGGGGCTCCTCTGTTTCTTCTCTGTCTGCTTCCTGAGCGGAAAAATTCTGATCTTTATGGTCCATGGAAGAAGAAGAATCTTTCTGATTTTGGAATCGTTACCCAGTGCATAGCTCCTACAAGGGTCAATGATCAATACCTGACAAATGTTTTGTTGAAAATCAATGCCAAGCTTGGTGGGTTGAATTCTTTGTTAGGCGTTGAATTTTCTCCTTCCATTCCTATTGTTTCCAAACGTCCCACCATCATTCTAGGCATGGATGTGTCCCATGGCTCGCCAGGGCAATCTGATATTCCATCAATTGCAGCGGTGGTCAGCTCTAGACAGTGGCCTCTAATATCAAAATATCGGGCATGTGTCCGCACCCAGTCTCCCAAGGTTGAAATGATTGATAATTTGTTCAAGAAAGTGTCTGAAAATGAGGATGAAGGAATAATAAGGGAACTTATGCTTGATTTCTATTCAAGTTCTGGGAAGCAAAAACCTGATAATATAATCATATTCAGGGATGGTGTTAGCGAGTCCCAATTCAATCAAGTTTTGAACATTGAACTTGATCAAATCATTGAGGCTTGTAAATTTCTTGATGAAAAGTGGGATCCAAAATTTTTGGTGATTGTTGCTCAAAAGAATCATCATACAAAATTCTTCCAGCCTGGAGCTCCTGACAATGTTCCTCCTGGAACTGTTATTGATAATAATGTTTGTCATCCTCGAAATTATGATTTCTACTTATGTGCGCATGCCGGAATGATTGGTACTAGCAGGCCTACACATTATCATGTTTTGTTAGATGAAATCGGTTTTTCTCCTGACGATCTACAGGAGCTTGTTCATTCTTTATCATATGTGTATCAGAGGAGTACCACTGCCATCTCTGTTGTTGCTCCAATATGCTATGCTCACTTGGCCGCATCTCAGATGGGACAGTTTATGAAATTTGAGGACAAATCTGAGACTTCTTCAAGTCATGGTGGACTTTCTGCTGCTGGTGCTGTTCCCGTCCCCCAATTGCCCAAATTGGAGGCGAAAGTATGCAACTCAATGTTCTTTTGTTGA 2742 0.4256 MDPFGANGNGNEDALPPPPPVVPSDIVPITAAQELPPEPVKKKVSRVPIARRGLATKGTKLSLLTNHFKVNVANNDGHFFQYSVSFSYEDGRPVEGKGVGRKVIDRVQETYGSELNGKDFAYDGEKTLFTIGSLARNKLEFTVVLEDVISNRNNGNCSPDGHGSPNESDKKRMRRPYRAKTFKVEISFASKIPLQAISNALRGQESENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSLDWAKAKRTLKNLRIKVSPSNQEYKITGLSELPCKEQMFTLKKRDGDDVTEEEVTVYDYFVNNRKMELRYSADLPCINVGKPKRPTYIPVELCSLLSLQRYTKALSTLQRSSLVEKSRQKPQERMRVLSDVLKISNYGAEPMLHKCGITIKPGFAQVEGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIAQPTKIERWAVANFSARCDVRGLVRDLIKCAGMKGIPIEDPFDVFEENGQFRRAPPMVRVEKMFENIQSKLPGAPLFLLCLLPERKNSDLYGPWKKKNLSDFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLGVEFSPSIPIVSKRPTIILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQSPKVEMIDNLFKKVSENEDEGIIRELMLDFYSSSGKQKPDNIIIFRDGVSESQFNQVLNIELDQIIEACKFLDEKWDPKFLVIVAQKNHHTKFFQPGAPDNVPPGTVIDNNVCHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQMGQFMKFEDKSETSSSHGGLSAAGAVPVPQLPKLEAKVCNSMFFC 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4085g00002 913 SMART Piwi_a_2 566 874 IPR003165 GO:0003676
Gabi4085g00002 913 Pfam Piwi domain 567 874 IPR003165 GO:0003676
Gabi4085g00002 913 Pfam Argonaute linker 2 domain 423 469 IPR032472 -
Gabi4085g00002 913 CDD Piwi_ago-like 441 866 IPR045246 -
Gabi4085g00002 913 FunFam Protein argonaute 3 634 913 - -
Gabi4085g00002 913 Pfam N-terminal domain of argonaute 60 220 IPR032474 -
Gabi4085g00002 913 MobiDBLite consensus disorder prediction 1 22 - -
Gabi4085g00002 913 CDD PAZ_argonaute_like 282 396 - -
Gabi4085g00002 913 Pfam PAZ domain 286 413 IPR003100 GO:0005515
Gabi4085g00002 913 ProSiteProfiles Piwi domain profile. 566 874 IPR003165 GO:0003676
Gabi4085g00002 913 Gene3D paz domain 276 401 - -
Gabi4085g00002 913 Gene3D - 633 913 IPR036397 GO:0003676
Gabi4085g00002 913 SMART DUF1785_2 230 282 IPR014811 -
Gabi4085g00002 913 FunFam Protein argonaute 7 277 401 - -
Gabi4085g00002 913 SUPERFAMILY PAZ domain 277 437 IPR036085 GO:0005515
Gabi4085g00002 913 MobiDBLite consensus disorder prediction 154 174 - -
Gabi4085g00002 913 Gene3D - 461 627 - -
Gabi4085g00002 913 ProSiteProfiles PAZ domain profile. 324 397 IPR003100 GO:0005515
Gabi4085g00002 913 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 55 876 - -
Gabi4085g00002 913 SUPERFAMILY Ribonuclease H-like 550 872 IPR012337 -
Gabi4085g00002 913 Pfam Argonaute linker 1 domain 232 280 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4085g00002 Gabi-Chr4085 9972 18186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4085g00002 51 913 Eukaryotic Initiation Factors Gene Family AT5G43810 35.039 2.15e-161 496