Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00090 ATGGCTTCCTCTAATAGACACTGGCCAAGCATGTTCAAGTCTAAGCCCTGCAATCCTCACCACCAATGGCAGCATGACATCAACTCCTCTCTCATGTCAACTAATGGATGCCATAGAAGCCCTTACGCTTCAGCAGCAGGTTGTGAGGAGAGAAGTCCAGAGCCAAAGCCAAGGTGGAATCCAAAACCGGAGCAAATTAGAATACTGGAAGCTATATTCAACTCTGGGATGGTGAATCCTCCAAGAGAAGAGATAAGGAAGATCAGGGCACAGTTGCAAGAGTATGGCCAAGTGGGTGATGCTAATGTCTTCTATTGGTTCCAGAACCGCAAATCCAGGAGCAAGCACAAGCTTCGCCATCTACAGAACTCAAAGAATCAGAACCCGGAAACCCAACAAAACCCTTCTCCTTCTCTCCCTCCTCAAGTCACTGCACCTAATTCATCCTCATCTTCTTCCTCTGAGAAATCTTCCCCTAAAGAAATAATACCCACCAAGGTTTTTTCCATTGGTTTCTCTAATGTCACCGATGTGGTGTCCAATTCTCCCACTAACTCTGTGAACCAAACCTATTTTCAGACCCACAATGAGTCCACTCTGCTTCCGCCGCCACCACCGCCACCGGCTGATGCTTTCTTCTTCCCAGTGCAACATAACGGACAAGGAGTAATACCTAATGCCATAACATCACAAGGATTTTGCTTCTCTGAGCTCTCTAGTGTGGTTCAAGCTCAATCACCTTGTCATAATAACGTTGGTCCTTGCACTAGTCTTTTGCTTAGTGAGATCATGAACCATGGAGCCTCCTCAAAGAAAGATCAATATCAAGACAAGTCCGTGAAAATAATGCACCAACCCTCACATTTTAATTTCTGTGTCACTCCAACATCTCACACTGCTACTGTTTTACCTCCCATCACTACCACCACCATTACTGTTCCATCCCCCATCATTGCTCAAGTTCAAGGGATTGGAGATCCAGCTGTTACGGCGAGATCAACGGTGTTCATTAACGATGTGGCGTTCGAGGTATCTGTGGGACCTTTCAACGTGCGTGAGGCTTTTGGTGATGATGCTGTGCTTATCCATGCAACTGGTCAGCCAGTTCTAACAAACCAGTGGGGTGTAACCCTCCAATCACTCCAGCATGGCGCATATTATTATCTGGTCTGCATCTTAATTAACACTCATTTCATAACCAACAGTACTAGTTTTTGTCTTAATTTGTGA 1230 0.4553 MASSNRHWPSMFKSKPCNPHHQWQHDINSSLMSTNGCHRSPYASAAGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNQNPETQQNPSPSLPPQVTAPNSSSSSSSEKSSPKEIIPTKVFSIGFSNVTDVVSNSPTNSVNQTYFQTHNESTLLPPPPPPPADAFFFPVQHNGQGVIPNAITSQGFCFSELSSVVQAQSPCHNNVGPCTSLLLSEIMNHGASSKKDQYQDKSVKIMHQPSHFNFCVTPTSHTATVLPPITTTTITVPSPIIAQVQGIGDPAVTARSTVFINDVAFEVSVGPFNVREAFGDDAVLIHATGQPVLTNQWGVTLQSLQHGAYYYLVCILINTHFITNSTSFCLNL 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00090 409 SUPERFAMILY Homeodomain-like 52 120 IPR009057 -
Gabi4083g00090 409 ProSiteProfiles 'Homeobox' domain profile. 52 117 IPR001356 GO:0003677
Gabi4083g00090 409 MobiDBLite consensus disorder prediction 143 160 - -
Gabi4083g00090 409 Gene3D - 56 122 - -
Gabi4083g00090 409 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 390 IPR044557 GO:0003700|GO:0050793
Gabi4083g00090 409 MobiDBLite consensus disorder prediction 115 160 - -
Gabi4083g00090 409 MobiDBLite consensus disorder prediction 42 63 - -
Gabi4083g00090 409 Pfam Homeodomain 56 116 IPR001356 GO:0003677
Gabi4083g00090 409 CDD homeodomain 55 117 IPR001356 GO:0003677
Gabi4083g00090 409 FunFam WUSCHEL-related homeobox 11 56 123 - -
Gabi4083g00090 409 SMART HOX_1 54 121 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00090 Gabi-Chr4083 681352 683204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4083g00090 1 390 Wox Gene Family AT5G45980 37.121 1.67e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi4083g00090 Homeodomain 5.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00090 - - aprc:113852083 617.461