Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00087 ATGGACCAACAACATAAAGTGTTTCTTCTGCTGCTACTTCTTTTCCAAGTTCTGCTTGTTTCAGGGCAGACAGCCACTCAAGACGTTTCTGGCCTAGTATCTCTCACACAATTCTGGAGTAATAAACCAGCAACTTGGGTGGGTACAGATCCTTGTGGCAGTGGTTGGGAAGGAATTAGTTGCACCAATTCAAGAGTTACCGATTTGAAACTATCAAGCTTTAATTTGGTTGGCCAGCTGTCTTCGGGAATCCAGTCTTTATCTGAACTAGTAAATCTGGATCTTTCTTCCAATACGGGCTTGACAGGATCAATTCCAAAAGAAATTGGGAGTTTGAAAAAGCTGCAATCCCTAGCACTGGTTGGTTGTGGTTTCAGTGGTCAAATTCCAGATTCACTAGGATCTTTAAATCAGCTGACCTTTCTAGCACTGAATTCTAATCAGTTCAATGGAAGTATTCCACCCTCTCTTGGCAATCTAACCAACATTAATTGGCTAGATCTTACTGATAACCAGCTTGATGGGTCTATTCCTGTCTCTGATAACCAAGGAGGACAAGGTCTTGACCTGCTCCTTAAGGCCCAACATTTTCATCTGGGGAACAATAAGCTCTCTGGTCCAATCCCAGCAAAACTTTTTAACTCCAAAATGATTCTAGAACATGTGCTTCTTGATAGCAATCAACTAACGGGTAGTATTCCAAGCACCGTTAGTCTTGTGAGCACATTGGAGGTGGTGCGCTTTGATAGGAATCAATTAAGCGGGGGAGTGCCTTCAAACTTCAACAATCTCGGACAACTTAGTGAGCTGTATTTAAGTCAAAACAAGCTGAATGGCTCACTGCCCGATCTTACTGGAATGAATAGACTCACTTATGTGGATCTGAGCAACAATAGTTTTAATTCTTCTGGTATTCCTTCATGGGCTTCAAATCTGGCAGAGCTGACAACTGTGATACTGGCGGACAACCAGCTCAGTGGCGCATTAAATCTTAGCAATGGCTATAGCAACAGTCTGCAACTCATTAATTTGGAGAATAATAGAATAACGGACTTCAATAAGGGAAGCAAACCAATAATTTTTGAACTGATACTGGCTGGCAACAAAATTTGTTTAGAAAACGGAGCTTCTCAAAATAGTTACTGCCAACAGCCCCAAGCCATGCCCTCATATTCAACACCATTAAATAATTGTTCACTTCCATCTTGCAGTTCCAATCAGATTTCTAGCCCCAACTGTATATGTGCATATCCATACACTGGAGTTCTGTTATCCAGAGCTCTTAGTTTCTCAAACTTTAGTAACACAAGTTACTACAAGGATCTTGAGCAGACTCTTCTAAATACTTTTCGAGCCCAAGATCTTCCAGTGGATTCAGTTTCTCTTAGTAATCCTTTCAAGAATTCATCCACTGGTTATTTTCAAATGGATCTGAATATCTTCCCATCTCAAACTGTTAGTTTCAATAGAACTGGAGTTTCAGGTGTTGCTTTTGTGCTCAGCAACCAAATTTACAAACCCCCAGAATTTTTCTCCCCTTACAGCTTCACTGGAAATAATTATGGATACTACGGAGGAGAACCTAAAGGATCAAGTTCATCACATACAGGGGTTATAGTTGGTGTAGTAGTTGCTGTTTTGGTCTTTCTTGTACTAGCACTCCTTGTAGGGATATATGCCCTCCGCCAAACAAGAAGAGCAAACAGATCTGCAGAGTTCAATCCTTTCGCAAATTGGGAACTGAACAAGAATAGTGGCACTGCTCCTCAATTGAAAGGAGCACGATGGTTTTCTTTTGAAGATCTAAAGAAATACACCAACAACTTCTCAGAAGACAATACCATTGGATCTGGGGGCTATGGAAAGGTTTACCGAGGTGTACTTCCTGCTGGGGAGTTGGTTGCCGTCAAACGGGCTGCAAAAGAATCTATGCAGGGTGCTGTTGAGTTTAAAACTGAGATTGAACTTCTATCAAGGGTCCATCATAAGAATCTTGTTAGTCTTGTTGGTTTCTGTTTTGAGAAGGGTGAACAAATGCTGGTGTATGAGTACATTCCAAATGGCGATATAATGGATAGTCTTTCAGGAAAGTCTGGGATCTGGATGGATTGGATACGGAGGCTAAAAGTAGCATTGGGTGCAGCCAGGGGTCTGGCCTATCTTCATGAACTTGCTAACCCACCAATCATACACAGAGACATAAAATCAAGCAATATTCTACTTGATGATAGCCTCAATGCAAAAGTTGCCGATTTTGGTCTCTCCAAACTTCTTGTTGATAGTGAAAGGGGCCATGTCACTACTCAAGTCAAAGGGACAATGGGGTACTTGGATCCTGAATATTACATGACCCAACAGTTGACTGAAAAGAGCGATGTATATAGTTTTGGAGTGCTAATGCTGGAACTAGTGACAGCAAGAAGGCCAATAGAGCAAGGAAAGTATATTGTAAGAGAGGTAATGAGGGTAATGGATACATCGAAAGATTTATACAACCTTCATTCCATTCTAGATCCCTCCATAATCAAAGTCACAAGCCCAAAGGGTCTAGAAAAGTTTGTGGGACTGGCAATGAGGTGTGTCAAAGAATATGGAGCTGACAGGCCTACAATGGCTGAGGTTGTAAAAGAGATTGAGAACATAATCGGGTTTGCTGGAATCAATCCTAATGCTGAATCAGCTACAACATCAGAAACTTATGAGGAAGCAAGCGGGGGGAATGTTAAAAATCCTTATGGCAACGAAGATTTTAGCTATAGTGGAATTTTCCCATCAGCAAAGGTAGAGCCTCAATGA 2796 0.4138 MDQQHKVFLLLLLLFQVLLVSGQTATQDVSGLVSLTQFWSNKPATWVGTDPCGSGWEGISCTNSRVTDLKLSSFNLVGQLSSGIQSLSELVNLDLSSNTGLTGSIPKEIGSLKKLQSLALVGCGFSGQIPDSLGSLNQLTFLALNSNQFNGSIPPSLGNLTNINWLDLTDNQLDGSIPVSDNQGGQGLDLLLKAQHFHLGNNKLSGPIPAKLFNSKMILEHVLLDSNQLTGSIPSTVSLVSTLEVVRFDRNQLSGGVPSNFNNLGQLSELYLSQNKLNGSLPDLTGMNRLTYVDLSNNSFNSSGIPSWASNLAELTTVILADNQLSGALNLSNGYSNSLQLINLENNRITDFNKGSKPIIFELILAGNKICLENGASQNSYCQQPQAMPSYSTPLNNCSLPSCSSNQISSPNCICAYPYTGVLLSRALSFSNFSNTSYYKDLEQTLLNTFRAQDLPVDSVSLSNPFKNSSTGYFQMDLNIFPSQTVSFNRTGVSGVAFVLSNQIYKPPEFFSPYSFTGNNYGYYGGEPKGSSSSHTGVIVGVVVAVLVFLVLALLVGIYALRQTRRANRSAEFNPFANWELNKNSGTAPQLKGARWFSFEDLKKYTNNFSEDNTIGSGGYGKVYRGVLPAGELVAVKRAAKESMQGAVEFKTEIELLSRVHHKNLVSLVGFCFEKGEQMLVYEYIPNGDIMDSLSGKSGIWMDWIRRLKVALGAARGLAYLHELANPPIIHRDIKSSNILLDDSLNAKVADFGLSKLLVDSERGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELVTARRPIEQGKYIVREVMRVMDTSKDLYNLHSILDPSIIKVTSPKGLEKFVGLAMRCVKEYGADRPTMAEVVKEIENIIGFAGINPNAESATTSETYEEASGGNVKNPYGNEDFSYSGIFPSAKVEPQ 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00087 931 Pfam Protein kinase domain 610 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4083g00087 931 SUPERFAMILY Protein kinase-like (PK-like) 588 877 IPR011009 -
Gabi4083g00087 931 Gene3D Ribonuclease Inhibitor 25 184 IPR032675 -
Gabi4083g00087 931 ProSitePatterns Protein kinases ATP-binding region signature. 615 641 IPR017441 GO:0005524
Gabi4083g00087 931 FunFam Leucine-rich repeat family protein 27 182 - -
Gabi4083g00087 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Gabi4083g00087 931 Gene3D Ribonuclease Inhibitor 185 282 IPR032675 -
Gabi4083g00087 931 SMART serkin_6 609 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4083g00087 931 PANTHER RECEPTOR-LIKE PROTEIN 55 37 881 - -
Gabi4083g00087 931 Gene3D Ribonuclease Inhibitor 283 388 IPR032675 -
Gabi4083g00087 931 FunFam Leucine-rich repeat protein kinase family protein 577 684 - -
Gabi4083g00087 931 SUPERFAMILY L domain-like 251 373 - -
Gabi4083g00087 931 MobiDBLite consensus disorder prediction 893 912 - -
Gabi4083g00087 931 ProSiteProfiles Protein kinase domain profile. 609 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4083g00087 931 CDD STKc_IRAK 615 881 - -
Gabi4083g00087 931 Gene3D Transferase(Phosphotransferase) domain 1 685 892 - -
Gabi4083g00087 931 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 685 894 - -
Gabi4083g00087 931 FunFam Leucine-rich repeat protein kinase family protein 184 283 - -
Gabi4083g00087 931 SUPERFAMILY L domain-like 33 282 - -
Gabi4083g00087 931 Gene3D Phosphorylase Kinase; domain 1 579 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00087 Gabi-Chr4083 658940 666637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4083g00087 8 931 Receptor kinase-like Gene Family AT5G49760 52.842 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Gabi4083g00087 Pkinase 3.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00087 - - gmx:100786172 1361.28