Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00072 ATGGGGTTGATCGATCTCAACACTACAGAGGACGATGAAACTCCATCGTCAGGTTCTTCTTTCTCCTCTTCCTGTCACTCGGTAATAAGCACTTCTGCTTCAGCTTTGGTTCCTCCTCCTACTCCTCCTCCTCCTGTGTGCTTGGAACTATGGCACGCGTGTGCAGGCCCTCTGATCTCTCTGCCGAAAAAAGGAAGCGTTGTTGTGTACTTTCCACAGGGACACTTTGAACAGGCTCAGGATTTTCCGGTCACTGCCTACAATATCCCACCCCATGTGTTCTGTCGCGTCCTTGATGTCAAGCTCCATGCAGAGGAAGGGAGCGATGAAGTGTATTGCCAAGTCTTGTTGGTCCCTCAAAGTGAGCAAGTGGAGCAAAACTTGCGGGATGGGGAAGTTGATGCTGATGGGGAAGAGGAGGATACTGAAGCTGTGAAGTCAACCACACCCCATATGTTCTGCAAGACTTTGACAGCTTCTGACACTAGCACTCATGGTGGATTCTCAGTCCCTCGTCGAGCTGCTGAAGATTGCTTTCCTGCCTTGGATTACAGTCAACAAAGACCTTCACAAGAGCTTGTGGCAAAGGATCTGCATGGTTTGGAATGGAGGTTTCGCCATATTTACAGGGGGCAGCCGCGGAGGCATTTGCTCACAACTGGGTGGAGTGCGTTTGTGAACAAGAAGAAGCTTGTGTCTGGAGATGCTGTGTTGTTTCTTAGGGGTGAGGATGGAGAACTGAGATTAGGGATTCGTCGGGCAGCTCAATTAAAAAGTTCTGGTGCCTTTGCATCTCCCTCTGGTCAGCAACTGAATCATGGCGCCATCATGGATATTGTTAATGCTTTATCTACAAGATGTGCGTTTAGTGTTTTCTATAATCCAAGGGTCAATTCTTCAGAATTCATCATACCTGTTCACAAATTCTTAAAGAGCCTTGATTGTTCTTACTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCGGAGGGGAGATTCACTGGATTAATCGCTGGAATTAATGATGCGGATCCTGTTAGATGGCCGCGATCTAAATGGAGATGCCTACTTGTAAGGTGGGATGACATAGAAACCCCTAGGCATAATAGGGTTTCCCCATGGGAAATTGAGCCTTCTGGTTCTGCTTCCACTTCCAGTAACTTGATGCCAGCCGGTTTGAAGAGAACAAGGATTGGATTGACTTCAGCAAAGCTAGAATTTCCAGTTGCCAATGGGACTGGAACATCAGACTTTGGGGAATCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACTCCCTTTGATGGTATTAATGCTCAGACTCCCCGGTTATATGAGTCAGGGAGGTGCTATCCTGGTTCTAACTGTTCTGGGATTGCTGCAACAGGAAATAATATCAGAATCCCTCATATGAGTTCTGATTTTTCCTGCAATGGCATTGGCATTGGCTTTAGTGAATCATTCCGATTCCACAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGCCAACCATATGGAAGAGCCTTGTCGTCTATTGATGAGTCTCGTGGAAATGGTCGCCTTGGACTTTTTGATGGTTATCAACTGCATAGCTCCAGAAATGGATGGTGTGGCCAGATGCGCGACAACCCTTCACATCTGCATGCATCTGTTCCATCTAGGCAAGTGTCATCTCCATCTTCTGTGTTAATGTTCCAGCAAGCAGTTAATCCAGTTTCAAACTGTGATTATAACAATAAAAGTAATCAGGAGATGGAGGGCAAAGTGCATTACCAAGGTTCATATGCATCTGAAGTAAAAGGTGGAATATTTGCATCTTCTTCCCAATCTGATGAGCCTATTTTCTCTAGGCTAGCTCAGGAAGGCACAAATTCTTTTGGTATGTTAAATTTTCATAATCAGTTAAGTAGTTCACGGTCGCATGATTCAGTGTCAGCACTTAGAGGCAGTCAAGAGTTGGTTTCCTCATGTAAAAGTAGCTGCAGACTCTTTGGTTTTTCATTAACTGAGGACACGCGCATTGCAAATAAAGAAGCTGATGCCTCTACGATGATCACTTGTCAGTTGAATTCTGGACCTTCCTTTAATAGAATTGTTGAAGATGAGTTCCACCCCGGCCATTCACTCAGGAGTAAGGCCGTGGTTGGAAGTAACTGCACCAAAGGTGTATTGCAGTATTGA 2211 0.4532 MGLIDLNTTEDDETPSSGSSFSSSCHSVISTSASALVPPPTPPPPVCLELWHACAGPLISLPKKGSVVVYFPQGHFEQAQDFPVTAYNIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPQSEQVEQNLRDGEVDADGEEEDTEAVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPALDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSSGAFASPSGQQLNHGAIMDIVNALSTRCAFSVFYNPRVNSSEFIIPVHKFLKSLDCSYSVGMRFRMRFETEDAAEGRFTGLIAGINDADPVRWPRSKWRCLLVRWDDIETPRHNRVSPWEIEPSGSASTSSNLMPAGLKRTRIGLTSAKLEFPVANGTGTSDFGESLRFRKVLQGQEILGVNTPFDGINAQTPRLYESGRCYPGSNCSGIAATGNNIRIPHMSSDFSCNGIGIGFSESFRFHKVLQGQEILPSQPYGRALSSIDESRGNGRLGLFDGYQLHSSRNGWCGQMRDNPSHLHASVPSRQVSSPSSVLMFQQAVNPVSNCDYNNKSNQEMEGKVHYQGSYASEVKGGIFASSSQSDEPIFSRLAQEGTNSFGMLNFHNQLSSSRSHDSVSALRGSQELVSSCKSSCRLFGFSLTEDTRIANKEADASTMITCQLNSGPSFNRIVEDEFHPGHSLRSKAVVGSNCTKGVLQY 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00072 736 CDD B3_DNA 151 253 IPR003340 GO:0003677
Gabi4083g00072 736 MobiDBLite consensus disorder prediction 9 23 - -
Gabi4083g00072 736 Pfam B3 DNA binding domain 153 254 IPR003340 GO:0003677
Gabi4083g00072 736 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 46 688 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi4083g00072 736 FunFam Auxin response factor 151 255 - -
Gabi4083g00072 736 Pfam Auxin response factor 280 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi4083g00072 736 Gene3D - 151 255 IPR015300 -
Gabi4083g00072 736 Gene3D - 316 390 - -
Gabi4083g00072 736 SUPERFAMILY DNA-binding pseudobarrel domain 146 262 IPR015300 -
Gabi4083g00072 736 ProSiteProfiles B3 DNA-binding domain profile. 153 255 IPR003340 GO:0003677
Gabi4083g00072 736 MobiDBLite consensus disorder prediction 1 23 - -
Gabi4083g00072 736 SMART B3_2 153 255 IPR003340 GO:0003677
Gabi4083g00072 736 FunFam Auxin response factor 316 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00072 Gabi-Chr4083 565047 576308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4083g00072 49 509 B3 DNA Binding Superfamily AT5G60450 50.420 4.35e-143 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi4083g00072 B3 2.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00072 K14486 - gmx:100789906 1172.92